CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole, cytosol

Predictor Summary:

nucleus 1
vacuole 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid, vacuole
Any Predictor:	cytosol, nucleus, plastid, vacuole
BaCelLo:	nucleus
MultiLoc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26000.1	CDY32970	AT5G42980.1	15352244
AT5G26000.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24996	Canola	cytosol	49.55	94.89
CDY68654	Canola	cytosol	48.96	91.67
CDY29614	Canola	cytosol, peroxisome, vacuole	23.44	84.95
CDY65716	Canola	cytosol	29.67	73.53
CDY52412	Canola	cytosol	18.99	71.91
CDY22731	Canola	cytosol	35.31	67.61
CDY67046	Canola	extracellular	92.58	57.14
CDY26308	Canola	cytosol	91.39	56.51
CDY05334	Canola	cytosol	86.94	55.6
CDY37226	Canola	extracellular	76.85	46.84
CDY46560	Canola	cytosol, vacuole	13.35	45.0
CDY71022	Canola	cytosol	70.62	44.49
CDY52022	Canola	cytosol	68.25	43.31
CDY07361	Canola	endoplasmic reticulum	67.95	42.57
Bra020549.1-P	Field mustard	cytosol	32.64	41.98
AT5G26000.1	Thale cress	endoplasmic reticulum, vacuole	65.88	41.04
CDY22724	Canola	cytosol	65.58	40.48
CDY09042	Canola	vacuole	62.02	39.58
CDY46331	Canola	endoplasmic reticulum, vacuole	63.5	39.48
CDY39513	Canola	endoplasmic reticulum, vacuole	61.13	39.16
CDY09054	Canola	vacuole	55.49	38.01
CDY29604	Canola	mitochondrion, plastid, vacuole	18.69	37.5
CDX87822	Canola	plasma membrane	13.65	36.51
CDY24999	Canola	cytosol, mitochondrion	20.18	33.5
CDY04261	Canola	vacuole	33.53	29.66
CDY71771	Canola	cytosol, vacuole	32.05	29.59
CDX90772	Canola	mitochondrion	50.74	28.89
CDY67044	Canola	cytosol	1.19	23.53
CDY70871	Canola	mitochondrion, vacuole	12.17	17.98
CDY22730	Canola	mitochondrion	24.04	17.92
CDY72290	Canola	cytosol, mitochondrion, vacuole	1.48	2.69

Protein Annotations

Gene3D:3.20.20.80	MapMan:9.5.2.1	GO:A0A078GER3	UniProt:A0A078GER3	EnsemblPlants:CDY24995	ProteinID:CDY24995
ProteinID:CDY24995.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00028808001	InterPro:Glyco_hydro_1	InterPro:Glyco_hydro_1_AS	InterPro:Glycoside_hydrolase_SF
PFAM:PF00232	PRINTS:PR00131	ScanProsite:PS00572	PANTHER:PTHR10353	PANTHER:PTHR10353:SF44	SUPFAM:SSF51445
TMHMM:TMhelix	UniParc:UPI0004EE7F72	SEG:seg	:	:	:

Description

BnaC02g40130DBnaC02g40130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GER3]

Coordinates

chrLK032167:+:129405..131169

Molecular Weight (calculated)

39189.4 Da

IEP (calculated)

8.275

GRAVY (calculated)

-0.487

Length

337 amino acids

Sequence
(BLAST)

001: MVDTKHRCYG GNSSTEPYIV AHNQLLAHAT VVDLYRTKYK FQKGKIGPVM ITRWFLPFDE SDPASIEAAE RMNQFFHGLY IYIYIYIYNQ KCISIYCIYP
101: LTKGRYPDIM RQIVGSRLPN FTEEEAELVA GSYDFLGLNY YVTQYAQPKP NPYPSETHTA MMDAGVKLTY DNSRGEFLGP LFVEDEVNGN SYYYPKGIYY
201: VMDYFKTKYG DPLIYVTENG FSTPSSENRE QAIADYKRID YLCSHLCFLR KVIKEKGVNV RGYFAWALGD NYEFCKGFTV RFGLSYVNWE DLDDRNLKES
301: GKWYQRFING TVKNSAKQDF LRSSLSSQSR KKRLADA

Best Arabidopsis Sequence Match ( AT5G25980.1 )
(BLAST)

001: MQHNTYIYIL TMKLLGFALA ILLVVATCKP EEEITCEENV PFTCSQTDRF NKQDFESDFI FGVASSAYQI EGGRGRGLNV WDGFTHRYPE KGGADLGNGD
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIK

Arabidopsis Description

TGG2Myrosinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C2]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.