Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 7
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26000.1 | CDY32970 | AT5G42980.1 | 15352244 |
| AT5G26000.1 | CDY43592 | AT5G42980.1 | 15352244 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22731 | Canola | cytosol | 32.52 | 90.91 |
| CDY22724 | Canola | cytosol | 79.88 | 71.98 |
| CDY09042 | Canola | vacuole | 76.63 | 71.4 |
| CDY46331 | Canola | endoplasmic reticulum, vacuole | 76.83 | 69.74 |
| CDY39513 | Canola | endoplasmic reticulum, vacuole | 73.98 | 69.2 |
| CDY24996 | Canola | cytosol | 22.97 | 64.2 |
| CDY68654 | Canola | cytosol | 23.37 | 63.89 |
| CDY65716 | Canola | cytosol | 17.48 | 63.24 |
| CDY26308 | Canola | cytosol | 67.28 | 60.73 |
| CDY67046 | Canola | extracellular | 66.67 | 60.07 |
| CDY70871 | Canola | mitochondrion, vacuole | 27.64 | 59.65 |
| CDY05334 | Canola | cytosol | 62.8 | 58.63 |
| CDY52412 | Canola | cytosol | 10.57 | 58.43 |
| CDY37226 | Canola | extracellular | 65.45 | 58.23 |
| AT5G26000.1 | Thale cress | endoplasmic reticulum, vacuole | 64.02 | 58.23 |
| CDY52022 | Canola | cytosol | 62.8 | 58.19 |
| CDY71022 | Canola | cytosol | 62.4 | 57.38 |
| CDY72290 | Canola | cytosol, mitochondrion, vacuole | 21.54 | 56.99 |
| CDY07361 | Canola | endoplasmic reticulum | 61.99 | 56.69 |
| CDY24995 | Canola | cytosol, plastid, vacuole | 38.01 | 55.49 |
| CDY04261 | Canola | vacuole | 39.02 | 50.39 |
| CDY71771 | Canola | cytosol, vacuole | 35.16 | 47.4 |
| CDY22730 | Canola | mitochondrion | 40.24 | 43.81 |
| CDY46560 | Canola | cytosol, vacuole | 8.33 | 41.0 |
| CDY24999 | Canola | cytosol, mitochondrion | 16.67 | 40.39 |
| CDY29604 | Canola | mitochondrion, plastid, vacuole | 13.01 | 38.1 |
| CDX87822 | Canola | plasma membrane | 9.35 | 36.51 |
| CDY29614 | Canola | cytosol, peroxisome, vacuole | 6.71 | 35.48 |
| CDX90772 | Canola | mitochondrion | 41.46 | 34.46 |
| CDY67044 | Canola | cytosol | 0.81 | 23.53 |
Protein Annotations
| Gene3D:3.20.20.80 | MapMan:50.3.2 | GO:A0A078F7P9 | UniProt:A0A078F7P9 | EnsemblPlants:CDY09054 | ProteinID:CDY09054 |
| ProteinID:CDY09054.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005975 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00001212001 | InterPro:Glyco_hydro_1 | InterPro:Glyco_hydro_1_AS | InterPro:Glycoside_hydrolase_SF |
| PFAM:PF00232 | PRINTS:PR00131 | ScanProsite:PS00572 | PANTHER:PTHR10353 | PANTHER:PTHR10353:SF44 | SUPFAM:SSF51445 |
| SignalP:SignalP-noTM | UniParc:UPI0004EE85B0 | : | : | : | : |
Description
BnaC08g10080DBnaC08g10080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F7P9]
Coordinates
chrLK031992:+:199921..202671
Molecular Weight (calculated)
56020.6 Da
IEP (calculated)
6.567
GRAVY (calculated)
-0.521
Length
492 amino acids
Sequence
(BLAST)
(BLAST)
001: MKHIGLILVF LLAVATCKAD EESTCKETLS ACGHTDQFNS GSFEKDFIFG VASSAYQACG VGRGLNVWDG FTHRYPNKSG SDHGNGDTTC DSYSYWELNY
101: SMYTYESYNM TKDIEALVEL NATGYRFSIA WSRIVPRGKR SRGDLPQALQ DEYEGFLDPQ IINDFKDYAD LCFYEFGDNV TNWITINQLY TVPTRGYGFG
201: SDAPGRCSRA LDPTCYAGNS STEPYIVAHH QLLAHAMVVD LYRKNYTHQG GSCMGPLTNG TYPQIMIDTV RNRLPSFTPE ESKLVKGSYD FIGLNYYVTQ
301: YVQPSPNHLD WANHTAMMDA GATLTYRNIS GHPIGPLFTE DKGDDTKNTY YYPEGISYVM EYFKTKYYNP LIYVTENGFS TPGDQTREDA KLDCKRIDYL
401: SSHLSFLSKV IKEKHVNVKG YFAWSLGDNY EFCKGFTVRF GLSYIDWNNV TDRDLKQSGK WYKKFITTKD LPKKDFLRSS LTFEKKKKFA DA
101: SMYTYESYNM TKDIEALVEL NATGYRFSIA WSRIVPRGKR SRGDLPQALQ DEYEGFLDPQ IINDFKDYAD LCFYEFGDNV TNWITINQLY TVPTRGYGFG
201: SDAPGRCSRA LDPTCYAGNS STEPYIVAHH QLLAHAMVVD LYRKNYTHQG GSCMGPLTNG TYPQIMIDTV RNRLPSFTPE ESKLVKGSYD FIGLNYYVTQ
301: YVQPSPNHLD WANHTAMMDA GATLTYRNIS GHPIGPLFTE DKGDDTKNTY YYPEGISYVM EYFKTKYYNP LIYVTENGFS TPGDQTREDA KLDCKRIDYL
401: SSHLSFLSKV IKEKHVNVKG YFAWSLGDNY EFCKGFTVRF GLSYIDWNNV TDRDLKQSGK WYKKFITTKD LPKKDFLRSS LTFEKKKKFA DA
001: MQHNTYIYIL TMKLLGFALA ILLVVATCKP EEEITCEENV PFTCSQTDRF NKQDFESDFI FGVASSAYQI EGGRGRGLNV WDGFTHRYPE KGGADLGNGD
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIK
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIK
Arabidopsis Description
TGG2Myrosinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C2]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.