CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, cytosol

Predictor Summary:

nucleus 1
vacuole 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, vacuole
Any Predictor:	cytosol, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	vacuole
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036914.1-P	Field mustard	cytosol	89.32	99.69
CDY70871	Canola	mitochondrion, vacuole	36.44	58.33
CDY72290	Canola	cytosol, mitochondrion, vacuole	29.32	57.53
CDY24999	Canola	cytosol, mitochondrion	30.96	55.66
CDY29614	Canola	cytosol, peroxisome, vacuole	12.05	47.31
CDY04261	Canola	vacuole	48.49	46.46
CDY26308	Canola	cytosol	60.27	40.37
CDY71022	Canola	cytosol	58.9	40.19
CDY67046	Canola	extracellular	59.73	39.93
CDY22724	Canola	cytosol	59.18	39.56
CDY52022	Canola	cytosol	57.26	39.36
CDY09042	Canola	vacuole	56.71	39.2
CDY05334	Canola	cytosol	56.44	39.09
CDY37226	Canola	extracellular	58.63	38.7
CDY39513	Canola	endoplasmic reticulum, vacuole	55.62	38.59
CDY46331	Canola	endoplasmic reticulum, vacuole	57.26	38.56
CDY22730	Canola	mitochondrion	46.58	37.61
CDY07361	Canola	endoplasmic reticulum	53.7	36.43
CDY09054	Canola	vacuole	47.4	35.16
CDX90772	Canola	mitochondrion	55.07	33.95
CDY24995	Canola	cytosol, plastid, vacuole	29.59	32.05
CDY29604	Canola	mitochondrion, plastid, vacuole	7.12	15.48
CDY68654	Canola	cytosol	7.4	15.0
CDY22731	Canola	cytosol	7.12	14.77
CDY24996	Canola	cytosol	6.85	14.2
CDY65716	Canola	cytosol	3.29	8.82
CDX87822	Canola	plasma membrane	2.74	7.94
CDY46560	Canola	cytosol, vacuole	0.82	3.0
CDY52412	Canola	cytosol	0.0	0.0
CDY67044	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY71771	EnsemblPlantsGene:GSBRNA2T00020169001	Gene3D:3.20.20.80	GO:A0A078K209	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019137
InterPro:Glyco_hydro_1	InterPro:Glycoside_hydrolase_SF	PANTHER:PTHR10353	PANTHER:PTHR10353:SF44	PFAM:PF00232	ProteinID:CDY71771
ProteinID:CDY71771.1	SUPFAM:SSF51445	UniParc:UPI0004EE631E	UniProt:A0A078K209	MapMan:9.5.2.1	:

Description

BnaCnng74380DBnaCnng74380D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K209]

Coordinates

chrLK047416:-:278..2458

Molecular Weight (calculated)

41828.9 Da

IEP (calculated)

7.614

GRAVY (calculated)

-0.328

Length

365 amino acids

Sequence
(BLAST)

001: GLNIWDGFTH RYPTKGKDKS TGDIAAGSYL HYKADIDVMK EIGVDAYRFS VAWSRIIPRG KASRGVNEEG IGYYNNLING LVSKGIKPFV TLFHWDLPQT
101: LQDEYEGFLD HQIIEDFKSY AEICFQRFGD RVKNWITINQ PYTIPTRGYA TGTDAPGRCS AWLNKNCYEG DSATEPYIVA HHVLLAHATV VNLYRQKYQL
201: IQAGEIGITM ITRWFLPYNN SDENLKAVER AKEFFHGWFM GPLTKGHYPL IMKQILKERL PRFTTIEALL VKGSYDFIGV NYYMTQFAKA VPPANPNKLS
301: VMTDSQVDLS YVNEDGPISR CPFGDVYYRP RGILDVLEYF KTNYGNPKVY ITENGKYVMI VEELF

Best Arabidopsis Sequence Match ( AT5G25980.1 )
(BLAST)

001: MQHNTYIYIL TMKLLGFALA ILLVVATCKP EEEITCEENV PFTCSQTDRF NKQDFESDFI FGVASSAYQI EGGRGRGLNV WDGFTHRYPE KGGADLGNGD
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIK

Arabidopsis Description

TGG2Myrosinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C2]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.