Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26000.1 | CDY32970 | AT5G42980.1 | 15352244 |
| AT5G26000.1 | CDY43592 | AT5G42980.1 | 15352244 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52412 | Canola | cytosol | 41.91 | 64.04 |
| CDY24996 | Canola | cytosol | 72.79 | 56.25 |
| CDY68654 | Canola | cytosol | 72.79 | 55.0 |
| CDY22731 | Canola | cytosol | 63.24 | 48.86 |
| CDY46560 | Canola | cytosol, vacuole | 30.15 | 41.0 |
| CDX87822 | Canola | plasma membrane | 32.35 | 34.92 |
| CDY29604 | Canola | mitochondrion, plastid, vacuole | 36.76 | 29.76 |
| CDY24995 | Canola | cytosol, plastid, vacuole | 73.53 | 29.67 |
| CDY07361 | Canola | endoplasmic reticulum | 98.53 | 24.91 |
| CDY67044 | Canola | cytosol | 2.94 | 23.53 |
| CDY05334 | Canola | cytosol | 73.53 | 18.98 |
| CDY52022 | Canola | cytosol | 72.79 | 18.64 |
| CDY37226 | Canola | extracellular | 75.74 | 18.63 |
| CDY26308 | Canola | cytosol | 73.53 | 18.35 |
| CDY67046 | Canola | extracellular | 72.79 | 18.13 |
| CDY09054 | Canola | vacuole | 63.24 | 17.48 |
| CDY09042 | Canola | vacuole | 64.71 | 16.67 |
| AT5G26000.1 | Thale cress | endoplasmic reticulum, vacuole | 65.44 | 16.45 |
| CDY39513 | Canola | endoplasmic reticulum, vacuole | 63.24 | 16.35 |
| CDY22724 | Canola | cytosol | 65.44 | 16.3 |
| CDY46331 | Canola | endoplasmic reticulum, vacuole | 63.97 | 16.05 |
| CDY71022 | Canola | cytosol | 62.5 | 15.89 |
| CDY71771 | Canola | cytosol, vacuole | 8.82 | 3.29 |
| CDY29614 | Canola | cytosol, peroxisome, vacuole | 2.21 | 3.23 |
| CDY22730 | Canola | mitochondrion | 9.56 | 2.88 |
| CDX90772 | Canola | mitochondrion | 9.56 | 2.2 |
| CDY24999 | Canola | cytosol, mitochondrion | 1.47 | 0.99 |
| CDY70871 | Canola | mitochondrion, vacuole | 0.74 | 0.44 |
| CDY04261 | Canola | vacuole | 0.0 | 0.0 |
| CDY72290 | Canola | cytosol, mitochondrion, vacuole | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY65716 | EnsemblPlantsGene:GSBRNA2T00048070001 | Gene3D:3.20.20.80 | GO:A0A078JIW0 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004553 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:Glyco_hydro_1 |
| InterPro:Glycoside_hydrolase_SF | PANTHER:PTHR10353 | PANTHER:PTHR10353:SF44 | PFAM:PF00232 | PRINTS:PR00131 | ProteinID:CDY65716 |
| ProteinID:CDY65716.1 | SUPFAM:SSF51445 | UniParc:UPI0004EBFAD1 | UniProt:A0A078JIW0 | MapMan:50.3.2 | : |
Description
BnaCnng48420DBnaCnng48420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JIW0]
Coordinates
chrLK034913:+:383..1129
Molecular Weight (calculated)
15968.9 Da
IEP (calculated)
10.082
GRAVY (calculated)
-0.601
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHFRTRYRN PLIYITENGF TTPASENRPE AVADSKRIDY LCSHLCFLRK VIREKRVNIK GYFAWSLGDN YEFAKGFAVR FGLTYVNWTD VSDRNLKDSG
101: RWYQRFINVT SKNAANEDFL RSSLSFKNKM KTLADA
101: RWYQRFINVT SKNAANEDFL RSSLSFKNKM KTLADA
001: MQHNTYIYIL TMKLLGFALA ILLVVATCKP EEEITCEENV PFTCSQTDRF NKQDFESDFI FGVASSAYQI EGGRGRGLNV WDGFTHRYPE KGGADLGNGD
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIKEKR VNVKGYFVWS LGDNYEFCNG YTVRFGLSYV
501: DFNNVTADRD LKASGLWYQS FLRDTTKNQD ILRSSLPFKN GDRKSLT
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIKEKR VNVKGYFVWS LGDNYEFCNG YTVRFGLSYV
501: DFNNVTADRD LKASGLWYQS FLRDTTKNQD ILRSSLPFKN GDRKSLT
Arabidopsis Description
TGG2Myrosinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C2]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.