Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- vacuole 1
- mitochondrion 1
- peroxisome 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26000.1 | CDY32970 | AT5G42980.1 | 15352244 |
| AT5G26000.1 | CDY43592 | AT5G42980.1 | 15352244 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24999 | Canola | cytosol, mitochondrion | 66.67 | 30.54 |
| CDY24995 | Canola | cytosol, plastid, vacuole | 84.95 | 23.44 |
| CDY70871 | Canola | mitochondrion, vacuole | 43.01 | 17.54 |
| CDY26308 | Canola | cytosol | 84.95 | 14.5 |
| CDY67046 | Canola | extracellular | 84.95 | 14.47 |
| CDX90772 | Canola | mitochondrion | 81.72 | 12.84 |
| CDY22730 | Canola | mitochondrion | 60.22 | 12.39 |
| CDY71022 | Canola | cytosol | 70.97 | 12.34 |
| CDY04261 | Canola | vacuole | 49.46 | 12.07 |
| CDY71771 | Canola | cytosol, vacuole | 47.31 | 12.05 |
| CDY52022 | Canola | cytosol | 68.82 | 12.05 |
| CDY46331 | Canola | endoplasmic reticulum, vacuole | 67.74 | 11.62 |
| CDY37226 | Canola | extracellular | 68.82 | 11.57 |
| CDY22724 | Canola | cytosol | 65.59 | 11.17 |
| AT5G26000.1 | Thale cress | endoplasmic reticulum, vacuole | 62.37 | 10.72 |
| CDY05334 | Canola | cytosol | 60.22 | 10.63 |
| CDY39513 | Canola | endoplasmic reticulum, vacuole | 58.06 | 10.27 |
| CDY07361 | Canola | endoplasmic reticulum | 58.06 | 10.04 |
| CDY09042 | Canola | vacuole | 54.84 | 9.66 |
| CDY09054 | Canola | vacuole | 35.48 | 6.71 |
| CDY68654 | Canola | cytosol | 6.45 | 3.33 |
| CDY46560 | Canola | cytosol, vacuole | 3.23 | 3.0 |
| CDY72290 | Canola | cytosol, mitochondrion, vacuole | 5.38 | 2.69 |
| CDY29604 | Canola | mitochondrion, plastid, vacuole | 4.3 | 2.38 |
| CDY65716 | Canola | cytosol | 3.23 | 2.21 |
| CDY24996 | Canola | cytosol | 3.23 | 1.7 |
| CDY22731 | Canola | cytosol | 3.23 | 1.7 |
| CDX87822 | Canola | plasma membrane | 2.15 | 1.59 |
| CDY67044 | Canola | cytosol | 0.0 | 0.0 |
| CDY52412 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.20.20.80 | MapMan:50.3.2 | GO:A0A078GWU8 | UniProt:A0A078GWU8 | EnsemblPlants:CDY29614 | ProteinID:CDY29614 |
| ProteinID:CDY29614.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005575 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00043355001 |
| InterPro:Glyco_hydro_1 | InterPro:Glycoside_hydrolase_SF | PFAM:PF00232 | PANTHER:PTHR10353 | PANTHER:PTHR10353:SF44 | SUPFAM:SSF51445 |
| TMHMM:TMhelix | UniParc:UPI0004EE500E | SEG:seg | : | : | : |
Description
BnaA05g15560DBnaA05g15560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWU8]
Coordinates
chrLK032240:+:261870..262273
Molecular Weight (calculated)
11005.3 Da
IEP (calculated)
8.403
GRAVY (calculated)
-0.111
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MVDTKHRCYG GNSSTEPYIV AHNQLLAHAT VVDLYRTKYK FQKGKIGPVM ITRWFLPFDE SDPASIEAAE RMNQFFLYIY IYIYIYIYIT NHL
001: MQHNTYIYIL TMKLLGFALA ILLVVATCKP EEEITCEENV PFTCSQTDRF NKQDFESDFI FGVASSAYQI EGGRGRGLNV WDGFTHRYPE KGGADLGNGD
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIK
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIK
Arabidopsis Description
TGG2Myrosinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C2]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.