Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26000.1 | CDY32970 | AT5G42980.1 | 15352244 |
| AT5G26000.1 | CDY43592 | AT5G42980.1 | 15352244 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68654 | Canola | cytosol | 93.75 | 91.67 |
| CDY65716 | Canola | cytosol | 56.25 | 72.79 |
| CDY52412 | Canola | cytosol | 36.36 | 71.91 |
| CDY22731 | Canola | cytosol | 64.2 | 64.2 |
| CDY24995 | Canola | cytosol, plastid, vacuole | 94.89 | 49.55 |
| CDY46560 | Canola | cytosol, vacuole | 23.86 | 42.0 |
| CDY29604 | Canola | mitochondrion, plastid, vacuole | 32.95 | 34.52 |
| CDX87822 | Canola | plasma membrane | 24.43 | 34.13 |
| CDY05334 | Canola | cytosol | 95.45 | 31.88 |
| CDY67046 | Canola | extracellular | 95.45 | 30.77 |
| CDY26308 | Canola | cytosol | 92.61 | 29.91 |
| Bra020549.1-P | Field mustard | cytosol | 38.64 | 25.95 |
| CDY37226 | Canola | extracellular | 78.98 | 25.14 |
| CDY67044 | Canola | cytosol | 2.27 | 23.53 |
| CDY09054 | Canola | vacuole | 64.2 | 22.97 |
| CDY07361 | Canola | endoplasmic reticulum | 69.32 | 22.68 |
| AT5G26000.1 | Thale cress | endoplasmic reticulum, vacuole | 67.61 | 22.0 |
| CDY71022 | Canola | cytosol | 66.48 | 21.87 |
| CDY52022 | Canola | cytosol | 65.91 | 21.85 |
| CDY09042 | Canola | vacuole | 64.77 | 21.59 |
| CDY22724 | Canola | cytosol | 65.34 | 21.06 |
| CDY39513 | Canola | endoplasmic reticulum, vacuole | 61.36 | 20.53 |
| CDY46331 | Canola | endoplasmic reticulum, vacuole | 60.8 | 19.74 |
| CDY71771 | Canola | cytosol, vacuole | 14.2 | 6.85 |
| CDY22730 | Canola | mitochondrion | 11.36 | 4.42 |
| CDX90772 | Canola | mitochondrion | 14.2 | 4.22 |
| CDY29614 | Canola | cytosol, peroxisome, vacuole | 1.7 | 3.23 |
| CDY04261 | Canola | vacuole | 6.82 | 3.15 |
| CDY24999 | Canola | cytosol, mitochondrion | 1.14 | 0.99 |
| CDY70871 | Canola | mitochondrion, vacuole | 0.57 | 0.44 |
| CDY72290 | Canola | cytosol, mitochondrion, vacuole | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.20.20.80 | MapMan:50.3.2 | GO:A0A078GHZ3 | UniProt:A0A078GHZ3 | EnsemblPlants:CDY24996 | ProteinID:CDY24996 |
| ProteinID:CDY24996.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005975 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00028810001 | InterPro:Glyco_hydro_1 | InterPro:Glyco_hydro_1_AS | InterPro:Glycoside_hydrolase_SF |
| PFAM:PF00232 | PRINTS:PR00131 | ScanProsite:PS00572 | PANTHER:PTHR10353 | PANTHER:PTHR10353:SF44 | SUPFAM:SSF51445 |
| UniParc:UPI0004EE9109 | SEG:seg | : | : | : | : |
Description
BnaC02g40120DBnaC02g40120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GHZ3]
Coordinates
chrLK032167:+:141424..142653
Molecular Weight (calculated)
20483.1 Da
IEP (calculated)
8.923
GRAVY (calculated)
-0.613
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAGVKLTYD NSRGEFLGPL FVEDKVNGNS YYYPKGIYYV MDYFKTKYGD PLIYVTENGF STPSSENREQ AIADYKRIDY LCSHLCFLRK VIKEKGVNVR
101: GYFAWALGDN YEFCKGFTVR FGLSYVNWED LDDRNLKESG KWYQRFINGT VKNSVKQDFL RSSLSSQSQK KRLADA
101: GYFAWALGDN YEFCKGFTVR FGLSYVNWED LDDRNLKESG KWYQRFINGT VKNSVKQDFL RSSLSSQSQK KRLADA
001: MQHNTYIYIL TMKLLGFALA ILLVVATCKP EEEITCEENV PFTCSQTDRF NKQDFESDFI FGVASSAYQI EGGRGRGLNV WDGFTHRYPE KGGADLGNGD
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIKEKR VNVKGYFVWS LGDNYEFCNG YTVRFGLSYV
501: DFNNVTADRD LKASGLWYQS FLRDTTKNQD ILRSSLPFKN GDRKSLT
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIKEKR VNVKGYFVWS LGDNYEFCNG YTVRFGLSYV
501: DFNNVTADRD LKASGLWYQS FLRDTTKNQD ILRSSLPFKN GDRKSLT
Arabidopsis Description
TGG2Myrosinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C2]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.