Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 7
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26000.1 | CDY32970 | AT5G42980.1 | 15352244 |
| AT5G26000.1 | CDY43592 | AT5G42980.1 | 15352244 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22724 | Canola | cytosol | 99.05 | 95.79 |
| Bra039705.1-P | Field mustard | vacuole | 98.48 | 95.59 |
| CDY39513 | Canola | endoplasmic reticulum, vacuole | 79.73 | 80.04 |
| CDY46331 | Canola | endoplasmic reticulum, vacuole | 81.63 | 79.52 |
| CDY22731 | Canola | cytosol | 25.76 | 77.27 |
| CDY09054 | Canola | vacuole | 71.4 | 76.63 |
| CDY05334 | Canola | cytosol | 69.7 | 69.83 |
| CDY26308 | Canola | cytosol | 71.59 | 69.36 |
| CDY67046 | Canola | extracellular | 71.02 | 68.68 |
| CDY72290 | Canola | cytosol, mitochondrion, vacuole | 23.86 | 67.74 |
| CDY04261 | Canola | vacuole | 48.3 | 66.93 |
| CDY07361 | Canola | endoplasmic reticulum | 67.8 | 66.54 |
| CDY52022 | Canola | cytosol | 66.86 | 66.48 |
| CDY37226 | Canola | extracellular | 69.32 | 66.18 |
| CDY71022 | Canola | cytosol | 66.67 | 65.79 |
| AT5G26000.1 | Thale cress | endoplasmic reticulum, vacuole | 67.05 | 65.43 |
| CDY24996 | Canola | cytosol | 21.59 | 64.77 |
| CDY65716 | Canola | cytosol | 16.67 | 64.71 |
| CDY70871 | Canola | mitochondrion, vacuole | 27.84 | 64.47 |
| CDY68654 | Canola | cytosol | 21.78 | 63.89 |
| CDY24995 | Canola | cytosol, plastid, vacuole | 39.58 | 62.02 |
| CDY24999 | Canola | cytosol, mitochondrion | 22.54 | 58.62 |
| CDY52412 | Canola | cytosol | 9.66 | 57.3 |
| CDY71771 | Canola | cytosol, vacuole | 39.2 | 56.71 |
| CDY29614 | Canola | cytosol, peroxisome, vacuole | 9.66 | 54.84 |
| CDY22730 | Canola | mitochondrion | 42.05 | 49.12 |
| CDX90772 | Canola | mitochondrion | 46.4 | 41.39 |
| CDY46560 | Canola | cytosol, vacuole | 7.58 | 40.0 |
| CDY29604 | Canola | mitochondrion, plastid, vacuole | 12.12 | 38.1 |
| CDX87822 | Canola | plasma membrane | 8.33 | 34.92 |
| CDY67044 | Canola | cytosol | 0.76 | 23.53 |
Protein Annotations
| Gene3D:3.20.20.80 | MapMan:9.5.2.1 | GO:A0A078F7G6 | UniProt:A0A078F7G6 | EnsemblPlants:CDY09042 | ProteinID:CDY09042 |
| ProteinID:CDY09042.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005975 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00001197001 | InterPro:Glyco_hydro_1 | InterPro:Glyco_hydro_1_AS | InterPro:Glycoside_hydrolase_SF |
| PFAM:PF00232 | PRINTS:PR00131 | ScanProsite:PS00572 | PANTHER:PTHR10353 | PANTHER:PTHR10353:SF44 | SUPFAM:SSF51445 |
| SignalP:SignalP-noTM | UniParc:UPI0004EEA504 | SEG:seg | : | : | : |
Description
BnaC08g09960DBnaC08g09960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F7G6]
Coordinates
chrLK031992:-:62692..65560
Molecular Weight (calculated)
60636.5 Da
IEP (calculated)
6.456
GRAVY (calculated)
-0.447
Length
528 amino acids
Sequence
(BLAST)
(BLAST)
001: MKHLGLILAF LLALATCKAD EEITCEENLP FKCSQPDRLN SSSFEKDFIF GVASSAYQAC CLGRGLNVWD GFTHRYPNKS GPDHGNGDTT CDSFSYWQKD
101: IDVLDELNAT GYRFSIAWSR IIPRGKRSRG VNKDGINYYH GLIDGLIDKG ITPFVTLFHW DLPQVLQDEY EGFLDPQIIH DFKDYANLCF QEFGHKVKNW
201: LTINQLYTVP TRGYGAGSDA PEPYIVAHNQ LLAHATVVDL YRKNYSHQGG KIGPVMITRW FLPYNDTDPD SIAATERMKE FFLGWYMFMG PLTNGTYPQI
301: MIDTVGERLP SFSPEESNLV KGSYDYLGLN YYVTQYAQPS PNPVHWANHT AMMDAGAKLT YINASNHSIG PLFEANSDET KNSYYYPKGI YYVMDYFKTK
401: YYNPLIYVTE NGISTPGNET RDESMFDYKR IEYLCSHLCF LSKVIKEKHV NVKGYFAWSL GDNYEFDKGF TVRFGLSYID WNNVTDRDLK LSGKWYQKFI
501: SPAIKNPLKK DFLRSSLTFE KNKKFEDA
101: IDVLDELNAT GYRFSIAWSR IIPRGKRSRG VNKDGINYYH GLIDGLIDKG ITPFVTLFHW DLPQVLQDEY EGFLDPQIIH DFKDYANLCF QEFGHKVKNW
201: LTINQLYTVP TRGYGAGSDA PEPYIVAHNQ LLAHATVVDL YRKNYSHQGG KIGPVMITRW FLPYNDTDPD SIAATERMKE FFLGWYMFMG PLTNGTYPQI
301: MIDTVGERLP SFSPEESNLV KGSYDYLGLN YYVTQYAQPS PNPVHWANHT AMMDAGAKLT YINASNHSIG PLFEANSDET KNSYYYPKGI YYVMDYFKTK
401: YYNPLIYVTE NGISTPGNET RDESMFDYKR IEYLCSHLCF LSKVIKEKHV NVKGYFAWSL GDNYEFDKGF TVRFGLSYID WNNVTDRDLK LSGKWYQKFI
501: SPAIKNPLKK DFLRSSLTFE KNKKFEDA
001: MQHNTYIYIL TMKLLGFALA ILLVVATCKP EEEITCEENV PFTCSQTDRF NKQDFESDFI FGVASSAYQI EGGRGRGLNV WDGFTHRYPE KGGADLGNGD
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIK
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIK
Arabidopsis Description
TGG2Myrosinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C2]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.