CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
vacuole 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26000.1	CDY32970	AT5G42980.1	15352244
AT5G26000.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29614	Canola	cytosol, peroxisome, vacuole	30.54	66.67
CDY70871	Canola	mitochondrion, vacuole	62.56	55.7
CDY72290	Canola	cytosol, mitochondrion, vacuole	41.87	45.7
Bra020523.1-P	Field mustard	cytosol	55.66	36.93
CDY71771	Canola	cytosol, vacuole	55.66	30.96
CDY04261	Canola	vacuole	57.64	30.71
CDY26308	Canola	cytosol	81.77	30.46
CDY67046	Canola	extracellular	81.77	30.4
CDX90772	Canola	mitochondrion	82.76	28.38
CDY05334	Canola	cytosol	72.91	28.08
CDY22730	Canola	mitochondrion	62.07	27.88
CDY71022	Canola	cytosol	70.94	26.92
CDY37226	Canola	extracellular	69.95	25.68
CDY52022	Canola	cytosol	67.0	25.61
CDY07361	Canola	endoplasmic reticulum	66.01	24.91
CDY22724	Canola	cytosol	65.52	24.36
CDY39513	Canola	endoplasmic reticulum, vacuole	62.56	24.14
AT5G26000.1	Thale cress	endoplasmic reticulum, vacuole	63.05	23.66
CDY46331	Canola	endoplasmic reticulum, vacuole	62.56	23.43
CDY09042	Canola	vacuole	58.62	22.54
CDY24995	Canola	cytosol, plastid, vacuole	33.5	20.18
CDY09054	Canola	vacuole	40.39	16.67
CDY46560	Canola	cytosol, vacuole	1.48	3.0
CDY29604	Canola	mitochondrion, plastid, vacuole	2.46	2.98
CDY68654	Canola	cytosol	2.46	2.78
CDX87822	Canola	plasma membrane	1.48	2.38
CDY65716	Canola	cytosol	0.99	1.47
CDY22731	Canola	cytosol	0.99	1.14
CDY24996	Canola	cytosol	0.99	1.14
CDY52412	Canola	cytosol	0.0	0.0
CDY67044	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY24999	EnsemblPlantsGene:GSBRNA2T00028813001	Gene3D:3.20.20.80	GO:A0A078GI82	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_1
InterPro:Glycoside_hydrolase_SF	PANTHER:PTHR10353	PANTHER:PTHR10353:SF44	PFAM:PF00232	ProteinID:CDY24999	ProteinID:CDY24999.1
SUPFAM:SSF51445	UniParc:UPI0004EE84FF	UniProt:A0A078GI82	MapMan:50.3.2	:	:

Description

BnaC02g40090DBnaC02g40090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GI82]

Coordinates

chrLK032167:+:144395..145823

Molecular Weight (calculated)

23635.3 Da

IEP (calculated)

7.557

GRAVY (calculated)

-0.272

Length

203 amino acids

Sequence
(BLAST)

001: MLRTLMVVSR GVNQGGLDYY HKLLDALLEK NITPFVTLFH WDLPQTLQDE YEGFLDRQII QNFKDYADLC FKEFGGKVKH WITINQLYTV PTRGYAIGTD
101: APGRCSPMVD TKHRCYGGNS STEAYIVAHN QLLAHATSYI YHVFNSAKKG KIGPVMITRW FLPYDESDPA SIEAAERMNQ FFHGWYIYFK YYQQCINTYC
201: MYV

Best Arabidopsis Sequence Match ( AT5G25980.1 )
(BLAST)

001: MQHNTYIYIL TMKLLGFALA ILLVVATCKP EEEITCEENV PFTCSQTDRF NKQDFESDFI FGVASSAYQI EGGRGRGLNV WDGFTHRYPE KGGADLGNGD
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIK

Arabidopsis Description

TGG2Myrosinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C2]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.