CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 7
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

cytosol: 16847873

msms PMID: 16847873 doi

V Katavic, GK Agrawal, M Hajduch, SL Harris, JJ Thelen

University of Missouri-Columbia, Department of Biochemistry, Columbia 65211, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26000.1	CDY32970	AT5G42980.1	15352244
AT5G26000.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67046	Canola	extracellular	97.43	97.25
CDY05334	Canola	cytosol	91.01	94.12
CDY24996	Canola	cytosol	29.91	92.61
Bra032343.1-P	Field mustard	cytosol	56.51	91.94
CDY24995	Canola	cytosol, plastid, vacuole	56.51	91.39
CDY68654	Canola	cytosol	29.72	90.0
CDY70871	Canola	mitochondrion, vacuole	37.61	89.91
CDY29614	Canola	cytosol, peroxisome, vacuole	14.5	84.95
CDY24999	Canola	cytosol, mitochondrion	30.46	81.77
CDY37226	Canola	extracellular	80.92	79.75
CDY72290	Canola	cytosol, mitochondrion, vacuole	26.61	77.96
CDY71022	Canola	cytosol	76.33	77.76
CDY52022	Canola	cytosol	74.5	76.46
CDY07361	Canola	endoplasmic reticulum	74.5	75.46
CDY52412	Canola	cytosol	12.11	74.16
CDY65716	Canola	cytosol	18.35	73.53
CDY04261	Canola	vacuole	51.01	72.97
CDY22724	Canola	cytosol	72.29	72.16
AT5G26000.1	Thale cress	endoplasmic reticulum, vacuole	71.19	71.72
CDY09042	Canola	vacuole	69.36	71.59
CDY46331	Canola	endoplasmic reticulum, vacuole	69.36	69.74
CDY39513	Canola	endoplasmic reticulum, vacuole	67.16	69.58
CDY22731	Canola	cytosol	21.83	67.61
CDY09054	Canola	vacuole	60.73	67.28
CDY71771	Canola	cytosol, vacuole	40.37	60.27
CDX90772	Canola	mitochondrion	62.02	57.09
CDY22730	Canola	mitochondrion	38.9	46.9
CDY46560	Canola	cytosol, vacuole	8.26	45.0
CDX87822	Canola	plasma membrane	8.81	38.1
CDY29604	Canola	mitochondrion, plastid, vacuole	11.56	37.5
CDY67044	Canola	cytosol	0.73	23.53

Protein Annotations

Gene3D:3.20.20.80	MapMan:9.5.2.1	GO:A0A078GNT1	UniProt:A0A078GNT1	EnsemblPlants:CDY26308	ProteinID:CDY26308
ProteinID:CDY26308.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00035009001	InterPro:Glyco_hydro_1	InterPro:Glyco_hydro_1_AS	InterPro:Glycoside_hydrolase_SF
PFAM:PF00232	PRINTS:PR00131	ScanProsite:PS00572	PFscan:PS51257	PANTHER:PTHR10353	PANTHER:PTHR10353:SF44
SUPFAM:SSF51445	SignalP:SignalP-noTM	UniParc:UPI0004EED5DC	SEG:seg	:	:

Description

BnaA09g26590DBnaA09g26590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNT1]

Coordinates

chrLK032187:-:456128..459102

Molecular Weight (calculated)

62445.6 Da

IEP (calculated)

7.230

GRAVY (calculated)

-0.498

Length

545 amino acids

Sequence
(BLAST)

001: MKLLGLALVF LLASASCKAD EEITCEENNP FTCSNTDILS SKNFGKDFIF GVASSAYQAW RGRGVNVWDG FSHRYPEKSG SDLKNGDTTC ESYTRWQKDV
101: DVMGELNATG YRFSFAWSRI IPKGKVSRGV NQGGLDYYHK LIDALLEKNI TPFVTLFHWD LPQTLQDEYE GFLDRQIIQD FKDYADLCFK EFGGKVKHWI
201: TINQLYTVPT RGYAVGTDAP GRCSPMVDTK HRCYGGNSST EPYIVAHNQL LAHATVVDLY RTKYKFQKGK IGPVMITRWF LPFDESDPAS IEAAERMNQF
301: FHGWYMEPLT KGRYPDIMRQ IVGSRLPNFT EEEAALVAGS YDFLGLNYYV TQYAQPKPNP YPSETHTAMM DAGVKLTYDN SRGEFLGPLF VEDKDNGNSY
401: YYPKGIYYVM DYFKTNYGNP LIYVTENGFS TPSSENREQA IADYKRIDYL CSHLCFLRKV IKEKGVNVRG YFAWALGDNY EFCKGFTVRF GLSYVNWDDL
501: DDRNLKESGK WYQRFINGTV KNLAKQDFLR SSLSSQSQKK RLSDA

Best Arabidopsis Sequence Match ( AT5G26000.1 )
(BLAST)

001: MKLLMLAFVF LLALATCKGD EFVCEENEPF TCNQTKLFNS GNFEKGFIFG VASSAYQVEG GRGRGLNVWD SFTHRFPEKG GADLGNGDTT CDSYTLWQKD
101: IDVMDELNST GYRFSIAWSR LLPKGKRSRG VNPGAIKYYN GLIDGLVAKN MTPFVTLFHW DLPQTLQDEY NGFLNKTIVD DFKDYADLCF ELFGDRVKNW
201: ITINQLYTVP TRGYALGTDA PGRCSPKIDV RCPGGNSSTE PYIVAHNQLL AHAAAVDVYR TKYKDDQKGM IGPVMITRWF LPFDHSQESK DATERAKIFF
301: HGWFMGPLTE GKYPDIMREY VGDRLPEFSE TEAALVKGSY DFLGLNYYVT QYAQNNQTIV PSDVHTALMD SRTTLTSKNA TGHAPGPPFN AASYYYPKGI
401: YYVMDYFKTT YGDPLIYVTE NGFSTPGDED FEKATADYKR IDYLCSHLCF LSKVIKEKNV NVKGYFAWSL GDNYEFCNGF TVRFGLSYVD FANITGDRDL
501: KASGKWFQKF INVTDEDSTN QDLLRSSVSS KNRDRKSLAD A

Arabidopsis Description

TGG1TGG1 [Source:UniProtKB/TrEMBL;Acc:A0A178U7L7]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.