Factsheet for Bra032343.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26000.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020549.1-P	Field mustard	cytosol	59.1	75.57
Bra036914.1-P	Field mustard	cytosol	57.61	59.02
CDY26308	Canola	cytosol	91.94	56.51
Bra020523.1-P	Field mustard	cytosol	50.75	55.56
Bra038094.1-P	Field mustard	cytosol	63.58	49.53
Bra039823.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	77.01	46.74
Bra039825.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	77.01	46.74
Bra016676.1-P	Field mustard	endoplasmic reticulum, vacuole	72.54	45.17
Bra039705.1-P	Field mustard	vacuole	71.64	44.12
Bra004012.1-P	Field mustard	endoplasmic reticulum	70.45	43.87
Bra023838.1-P	Field mustard	endoplasmic reticulum, vacuole	65.67	42.72
AT5G26000.1	Thale cress	endoplasmic reticulum, vacuole	68.96	42.7
Bra014287.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	47.16	31.35
Bra030473.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	47.76	31.07
Bra020551.1-P	Field mustard	cytosol	0.3	0.78

Protein Annotations

EnsemblPlants:Bra032343.1	EnsemblPlants:Bra032343.1-P	EnsemblPlantsGene:Bra032343	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_1
InterPro:Glycoside_hydrolase_SF	PANTHER:PTHR10353	PANTHER:PTHR10353:SF44	PFAM:PF00232	SEG:seg	SUPFAM:SSF51445
UniParc:UPI0002542632	UniProt:M4EU61	MapMan:9.5.2.1	:	:	:

Description

AT5G26000 (E=3e-134) TGG1, BGLU38 | TGG1 (THIOGLUCOSIDE GLUCOHYDROLASE 1); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase

Coordinates

chrA09:-:22412842..22414482

Molecular Weight (calculated)

38715.2 Da

IEP (calculated)

7.058

GRAVY (calculated)

-0.396

Length

335 amino acids

Sequence
(BLAST)

001: MKLQKDVDVM GELNATGYRF SFAWLRIIPK GKASRGVNQG GLDYYHKLID ALLEKNITPF VTLFHWDLPQ TLQDEYEGFL DRQIIQDFKD CADLCFKEFG
101: GKVKHWITIN QLYTVPTRGY AVGTDAPGRC SPMVDTKHRC YGGNSSTEPY IVAHNQLLAH ATVVDLYRTK YKFQKGKIGP VKITRWFLPF DESDPATIEA
201: AESMNQFFHG WYMEPLTKGR YPDIMRQIVG SRLPNFTEEE AQLVAGSYDF LGLNYYVTQY AQPKPNPYPS ETHTAMMDAG VKLTYKDNGN SYYYPKGIYY
301: VMDYFKTNYG NPLIYVTENG EFYILLLLYF HLYHA

Best Arabidopsis Sequence Match ( AT5G25980.1 )
(BLAST)

001: MQHNTYIYIL TMKLLGFALA ILLVVATCKP EEEITCEENV PFTCSQTDRF NKQDFESDFI FGVASSAYQI EGGRGRGLNV WDGFTHRYPE KGGADLGNGD
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIK

Arabidopsis Description

TGG2Myrosinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C2]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.