Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 9
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra027469.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26000.1 | Bra027469.1-P | AT5G42980.1 | 15352244 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22724 | Canola | cytosol | 99.82 | 99.45 |
| CDY09042 | Canola | vacuole | 95.59 | 98.48 |
| Bra023838.1-P | Field mustard | endoplasmic reticulum, vacuole | 77.76 | 82.14 |
| Bra038094.1-P | Field mustard | cytosol | 63.6 | 80.47 |
| Bra020549.1-P | Field mustard | cytosol | 35.29 | 73.28 |
| Bra020523.1-P | Field mustard | cytosol | 40.62 | 72.22 |
| Bra032343.1-P | Field mustard | cytosol | 44.12 | 71.64 |
| Bra039823.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 70.4 | 69.38 |
| Bra039825.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 70.4 | 69.38 |
| Bra016676.1-P | Field mustard | endoplasmic reticulum, vacuole | 68.57 | 69.33 |
| Bra004012.1-P | Field mustard | endoplasmic reticulum | 68.2 | 68.96 |
| AT5G26000.1 | Thale cress | endoplasmic reticulum, vacuole | 67.65 | 68.02 |
| Bra036914.1-P | Field mustard | cytosol | 35.48 | 59.02 |
| Bra030473.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 44.85 | 47.38 |
| Bra014287.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 43.75 | 47.22 |
| Bra020551.1-P | Field mustard | cytosol | 9.56 | 40.62 |
Protein Annotations
| Gene3D:3.20.20.80 | MapMan:9.5.2.1 | EnsemblPlantsGene:Bra039705 | EnsemblPlants:Bra039705.1 | EnsemblPlants:Bra039705.1-P | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 |
| InterPro:Glyco_hydro_1 | InterPro:Glyco_hydro_1_AS | InterPro:Glycoside_hydrolase_SF | UniProt:M4FF33 | PFAM:PF00232 | PRINTS:PR00131 |
| ScanProsite:PS00572 | PANTHER:PTHR10353 | PANTHER:PTHR10353:SF44 | SUPFAM:SSF51445 | SignalP:SignalP-noTM | UniParc:UPI0002545A08 |
| SEG:seg | : | : | : | : | : |
Description
AT5G26000 (E=2e-210) TGG1, BGLU38 | TGG1 (THIOGLUCOSIDE GLUCOHYDROLASE 1); hydrolase, hydrolyzing O-glycosyl compounds / thioglucosidase
Coordinates
chrA08:-:6542904..6545617
Molecular Weight (calculated)
62155.2 Da
IEP (calculated)
6.346
GRAVY (calculated)
-0.434
Length
544 amino acids
Sequence
(BLAST)
(BLAST)
001: MKHLGLILAF LLALATCKAD EEITCEENLP FKCSQPDRLN SSSFEKDFIF GVASSAYQAC CLGRGLNVWD GFTHRYPNKS GPDHGNGDTT CDSFSYWQKD
101: IDVLDELNAT GYRFSIAWSR IIPRGKRSRG VNKDGINYYH GLIDGLIDKG ITPFVTLFHW DLPQVLQDEY EGFLDPQIIH DFKDYANLCF QEFGHKVKNW
201: LTINQLYTVP TRGYGAGSDA PGRCSPMVDP TCYAGNSSTE PYIVAHNQLL AHATVVDLYR KNYSHQGGKI GPVMITRWFL PYNDTDPDSI AAPERMKEFF
301: LGWFMGPLTN GTYPQIMIDT VGDRLPSFSP EESNLVKGSY DFLGLNYYVT QYAQPSPNPV HWANHTAMMD AGAKLTYINA SNHYIGPLFE ANSDETENSY
401: YYPKGIYYVM DYFKTKYYNP LIYVTENGIS TPGNETRDES MFDYKRIEYL CSHLCFLSKV IKEKHVNVKG YFAWSLGDNY EFDKGFTVRF GLSYIDWNNV
501: TDRDLKLSGK WYQKFISPAI KNPLKKDFLR SSLTFEKNKK FADA
101: IDVLDELNAT GYRFSIAWSR IIPRGKRSRG VNKDGINYYH GLIDGLIDKG ITPFVTLFHW DLPQVLQDEY EGFLDPQIIH DFKDYANLCF QEFGHKVKNW
201: LTINQLYTVP TRGYGAGSDA PGRCSPMVDP TCYAGNSSTE PYIVAHNQLL AHATVVDLYR KNYSHQGGKI GPVMITRWFL PYNDTDPDSI AAPERMKEFF
301: LGWFMGPLTN GTYPQIMIDT VGDRLPSFSP EESNLVKGSY DFLGLNYYVT QYAQPSPNPV HWANHTAMMD AGAKLTYINA SNHYIGPLFE ANSDETENSY
401: YYPKGIYYVM DYFKTKYYNP LIYVTENGIS TPGNETRDES MFDYKRIEYL CSHLCFLSKV IKEKHVNVKG YFAWSLGDNY EFDKGFTVRF GLSYIDWNNV
501: TDRDLKLSGK WYQKFISPAI KNPLKKDFLR SSLTFEKNKK FADA
001: MKLLMLAFVF LLALATCKGD EFVCEENEPF TCNQTKLFNS GNFEKGFIFG VASSAYQVEG GRGRGLNVWD SFTHRFPEKG GADLGNGDTT CDSYTLWQKD
101: IDVMDELNST GYRFSIAWSR LLPKGKRSRG VNPGAIKYYN GLIDGLVAKN MTPFVTLFHW DLPQTLQDEY NGFLNKTIVD DFKDYADLCF ELFGDRVKNW
201: ITINQLYTVP TRGYALGTDA PGRCSPKIDV RCPGGNSSTE PYIVAHNQLL AHAAAVDVYR TKYKDDQKGM IGPVMITRWF LPFDHSQESK DATERAKIFF
301: HGWFMGPLTE GKYPDIMREY VGDRLPEFSE TEAALVKGSY DFLGLNYYVT QYAQNNQTIV PSDVHTALMD SRTTLTSKNA TGHAPGPPFN AASYYYPKGI
401: YYVMDYFKTT YGDPLIYVTE NGFSTPGDED FEKATADYKR IDYLCSHLCF LSKVIKEKNV NVKGYFAWSL GDNYEFCNGF TVRFGLSYVD FANITGDRDL
501: KASGKWFQKF INVTDEDSTN QDLLRSSVSS KNRDRKSLAD A
101: IDVMDELNST GYRFSIAWSR LLPKGKRSRG VNPGAIKYYN GLIDGLVAKN MTPFVTLFHW DLPQTLQDEY NGFLNKTIVD DFKDYADLCF ELFGDRVKNW
201: ITINQLYTVP TRGYALGTDA PGRCSPKIDV RCPGGNSSTE PYIVAHNQLL AHAAAVDVYR TKYKDDQKGM IGPVMITRWF LPFDHSQESK DATERAKIFF
301: HGWFMGPLTE GKYPDIMREY VGDRLPEFSE TEAALVKGSY DFLGLNYYVT QYAQNNQTIV PSDVHTALMD SRTTLTSKNA TGHAPGPPFN AASYYYPKGI
401: YYVMDYFKTT YGDPLIYVTE NGFSTPGDED FEKATADYKR IDYLCSHLCF LSKVIKEKNV NVKGYFAWSL GDNYEFCNGF TVRFGLSYVD FANITGDRDL
501: KASGKWFQKF INVTDEDSTN QDLLRSSVSS KNRDRKSLAD A
Arabidopsis Description
TGG1TGG1 [Source:UniProtKB/TrEMBL;Acc:A0A178U7L7]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.