CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

cytosol: 16847873

msms PMID: 16847873 doi

V Katavic, GK Agrawal, M Hajduch, SL Harris, JJ Thelen

University of Missouri-Columbia, Department of Biochemistry, Columbia 65211, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26000.1	CDY32970	AT5G42980.1	15352244
AT5G26000.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039823.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	97.01	94.02
Bra039825.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	97.01	94.02
CDY37226	Canola	extracellular	94.77	91.68
CDY72290	Canola	cytosol, mitochondrion, vacuole	29.91	86.02
CDY52022	Canola	cytosol	79.44	80.04
CDY04261	Canola	vacuole	56.07	78.74
CDY70871	Canola	mitochondrion, vacuole	33.46	78.51
CDY67046	Canola	extracellular	78.5	76.92
CDY26308	Canola	cytosol	77.76	76.33
CDY07361	Canola	endoplasmic reticulum	76.64	76.21
CDY05334	Canola	cytosol	73.83	74.95
CDY29614	Canola	cytosol, peroxisome, vacuole	12.34	70.97
CDY24999	Canola	cytosol, mitochondrion	26.92	70.94
CDY24995	Canola	cytosol, plastid, vacuole	44.49	70.62
AT5G26000.1	Thale cress	endoplasmic reticulum, vacuole	68.22	67.47
CDY22724	Canola	cytosol	68.6	67.22
CDY09042	Canola	vacuole	65.79	66.67
CDY68654	Canola	cytosol	22.43	66.67
CDY24996	Canola	cytosol	21.87	66.48
CDY46331	Canola	endoplasmic reticulum, vacuole	64.86	64.02
CDY39513	Canola	endoplasmic reticulum, vacuole	62.62	63.69
CDY65716	Canola	cytosol	15.89	62.5
CDY09054	Canola	vacuole	57.38	62.4
CDY71771	Canola	cytosol, vacuole	40.19	58.9
CDY22731	Canola	cytosol	18.69	56.82
CDY52412	Canola	cytosol	8.79	52.81
CDX90772	Canola	mitochondrion	55.33	50.0
CDY22730	Canola	mitochondrion	39.25	46.46
CDY46560	Canola	cytosol, vacuole	7.85	42.0
CDY29604	Canola	mitochondrion, plastid, vacuole	11.78	37.5
CDX87822	Canola	plasma membrane	8.79	37.3
CDY67044	Canola	cytosol	0.75	23.53

Protein Annotations

Gene3D:3.20.20.80	MapMan:9.5.2.1	GO:A0A078JZC4	UniProt:A0A078JZC4	EnsemblPlants:CDY71022	ProteinID:CDY71022
ProteinID:CDY71022.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00010581001	InterPro:Glyco_hydro_1	InterPro:Glyco_hydro_1_AS	InterPro:Glycoside_hydrolase_SF
PFAM:PF00232	PRINTS:PR00131	ScanProsite:PS00572	PFscan:PS51257	PANTHER:PTHR10353	PANTHER:PTHR10353:SF44
SUPFAM:SSF51445	SignalP:SignalP-noTM	UniParc:UPI0004EEC480	:	:	:

Description

BnaA09g52790DBnaA09g52790D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JZC4]

Coordinates

chrLK044162:-:2..2720

Molecular Weight (calculated)

60973.2 Da

IEP (calculated)

7.426

GRAVY (calculated)

-0.418

Length

535 amino acids

Sequence
(BLAST)

001: MKLHGLALIG FLIAVVSCKA IEECRENEPF TCGNTDQLSS KSFPKDFIFG VASAAYQACY KSTIFDVEGG RGRGLNVWDG FTHRYPEKGG SDHGNGDTTC
101: ESYTRWQKDI DIIDELNATG YRFSFAWSRI IPKGKVSRGV NKGGIEYYHK LLDGLIAKNI TPFVTLYHWD LPQTLQDEYE GFLNRTVIDD FRDYADLCFK
201: EFGGKVKNWI TINQLYTVPT RGYAIGTDAP GRCSPAVDER CYGGNSSTEP YIVAHNQLLA HAAAVDVYRR KYKFQKGKIG PVMITRWFLP FDETDASRDA
301: AERMKEFFLG WFMEPLTKGR YPDIMREIVG SRLPNFTEAE AELVAGSYDF LGLNYYTTQY AQAKPNPVTW ANHTAMMDPG AKLTYNNSRG ENLGPLFVKD
401: EKNGNAYYYP KGIYYVMDYF KTKYSNPLIY ITENGFSTPG EENRDKAIAD SKRIDYLCSH LCFLRKVIRE KGVNIKGYFA WALGDNYEFC KGFTVRFGLS
501: YVNWTDLNDR NLKDSGKCSQ MHETLYPTIM IIFIS

Best Arabidopsis Sequence Match ( AT5G26000.1 )
(BLAST)

001: MKLLMLAFVF LLALATCKGD EFVCEENEPF TCNQTKLFNS GNFEKGFIFG VASSAYQVEG GRGRGLNVWD SFTHRFPEKG GADLGNGDTT CDSYTLWQKD
101: IDVMDELNST GYRFSIAWSR LLPKGKRSRG VNPGAIKYYN GLIDGLVAKN MTPFVTLFHW DLPQTLQDEY NGFLNKTIVD DFKDYADLCF ELFGDRVKNW
201: ITINQLYTVP TRGYALGTDA PGRCSPKIDV RCPGGNSSTE PYIVAHNQLL AHAAAVDVYR TKYKDDQKGM IGPVMITRWF LPFDHSQESK DATERAKIFF
301: HGWFMGPLTE GKYPDIMREY VGDRLPEFSE TEAALVKGSY DFLGLNYYVT QYAQNNQTIV PSDVHTALMD SRTTLTSKNA TGHAPGPPFN AASYYYPKGI
401: YYVMDYFKTT YGDPLIYVTE NGFSTPGDED FEKATADYKR IDYLCSHLCF LSKVIKEKNV NVKGYFAWSL GDNYEFCNGF TVRFGLSYVD FANITGDRDL
501: KASGKWFQKF INVTDEDSTN QDLLRSSVSS KNRDRKSLAD A

Arabidopsis Description

TGG1TGG1 [Source:UniProtKB/TrEMBL;Acc:A0A178U7L7]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.