CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, vacuole, cytosol

Predictor Summary:

nucleus 1
plastid 1
vacuole 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26000.1	CDY32970	AT5G42980.1	15352244
AT5G26000.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70871	Canola	mitochondrion, vacuole	77.42	63.16
CDY24999	Canola	cytosol, mitochondrion	45.7	41.87
CDY04261	Canola	vacuole	82.26	40.16
CDY52022	Canola	cytosol	94.09	32.96
Bra016676.1-P	Field mustard	endoplasmic reticulum, vacuole	94.09	32.53
CDY07361	Canola	endoplasmic reticulum	86.56	29.93
CDY71022	Canola	cytosol	86.02	29.91
CDY71771	Canola	cytosol, vacuole	57.53	29.32
CDY37226	Canola	extracellular	86.56	29.11
CDY22730	Canola	mitochondrion	67.2	27.65
CDY26308	Canola	cytosol	77.96	26.61
CDY67046	Canola	extracellular	77.96	26.56
CDY05334	Canola	cytosol	73.12	25.81
AT5G26000.1	Thale cress	endoplasmic reticulum, vacuole	74.19	25.51
CDY22724	Canola	cytosol	72.58	24.73
CDY39513	Canola	endoplasmic reticulum, vacuole	69.89	24.71
CDX90772	Canola	mitochondrion	77.96	24.49
CDY46331	Canola	endoplasmic reticulum, vacuole	69.89	23.99
CDY09042	Canola	vacuole	67.74	23.86
CDY09054	Canola	vacuole	56.99	21.54
CDY29614	Canola	cytosol, peroxisome, vacuole	2.69	5.38
CDY24995	Canola	cytosol, plastid, vacuole	2.69	1.48
CDX87822	Canola	plasma membrane	0.54	0.79
CDY29604	Canola	mitochondrion, plastid, vacuole	0.54	0.6
CDY24996	Canola	cytosol	0.0	0.0
CDY46560	Canola	cytosol, vacuole	0.0	0.0
CDY52412	Canola	cytosol	0.0	0.0
CDY65716	Canola	cytosol	0.0	0.0
CDY67044	Canola	cytosol	0.0	0.0
CDY22731	Canola	cytosol	0.0	0.0
CDY68654	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY72290	EnsemblPlantsGene:GSBRNA2T00026237001	Gene3D:3.20.20.80	GO:A0A078K0W6	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_1
InterPro:Glycoside_hydrolase_SF	PANTHER:PTHR10353	PANTHER:PTHR10353:SF44	PFAM:PF00232	ProteinID:CDY72290	ProteinID:CDY72290.1
SUPFAM:SSF51445	UniParc:UPI0004EDBDB0	UniProt:A0A078K0W6	MapMan:50.3.2	:	:

Description

BnaCnng76930DBnaCnng76930D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K0W6]

Coordinates

chrLK049928:+:1012..2213

Molecular Weight (calculated)

21220.1 Da

IEP (calculated)

6.908

GRAVY (calculated)

-0.502

Length

186 amino acids

Sequence
(BLAST)

001: MPHGCLFSFQ IEGGRGRGLN IWDGFTHRFP EKGGSDLGNG DTTCESYTMW QKDIDIMDEM NATGYRFSFA WSRIIPKGKV SRGVNKGGLE YYHRLIDGLI
101: AKNITPFVTL YHWDLPQTLQ DEYEGFLNRQ VIEDFRDFAD LCFKEFGGKV KNWLTINQLY SVPTRGYSTG ADAPGRCSPK VDARCY

Best Arabidopsis Sequence Match ( AT5G25980.1 )
(BLAST)

001: MQHNTYIYIL TMKLLGFALA ILLVVATCKP EEEITCEENV PFTCSQTDRF NKQDFESDFI FGVASSAYQI EGGRGRGLNV WDGFTHRYPE KGGADLGNGD
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIK

Arabidopsis Description

TGG2Myrosinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C2]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.