CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26000.1	CDY32970	AT5G42980.1	15352244
AT5G26000.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70871	Canola	mitochondrion, vacuole	35.14	91.23
CDY24999	Canola	cytosol, mitochondrion	28.38	82.76
CDY29614	Canola	cytosol, peroxisome, vacuole	12.84	81.72
CDY72290	Canola	cytosol, mitochondrion, vacuole	24.49	77.96
CDY04261	Canola	vacuole	40.88	63.52
CDY67046	Canola	extracellular	57.43	62.27
CDY26308	Canola	cytosol	57.09	62.02
CDY05334	Canola	cytosol	53.38	59.96
CDY71022	Canola	cytosol	50.0	55.33
CDY71771	Canola	cytosol, vacuole	33.95	55.07
CDY37226	Canola	extracellular	50.84	54.43
Bra020523.1-P	Field mustard	cytosol	28.04	54.25
CDY52022	Canola	cytosol	46.62	51.98
CDY24995	Canola	cytosol, plastid, vacuole	28.89	50.74
CDY07361	Canola	endoplasmic reticulum	44.93	49.44
CDY22724	Canola	cytosol	44.09	47.8
AT5G26000.1	Thale cress	endoplasmic reticulum, vacuole	43.24	47.32
CDY39513	Canola	endoplasmic reticulum, vacuole	41.72	46.96
CDY46331	Canola	endoplasmic reticulum, vacuole	42.74	46.68
CDY09042	Canola	vacuole	41.39	46.4
CDY22730	Canola	mitochondrion	33.78	44.25
CDY09054	Canola	vacuole	34.46	41.46
CDY46560	Canola	cytosol, vacuole	2.7	16.0
CDY22731	Canola	cytosol	4.73	15.91
CDY68654	Canola	cytosol	4.56	15.0
CDY24996	Canola	cytosol	4.22	14.2
CDY29604	Canola	mitochondrion, plastid, vacuole	3.55	12.5
CDY52412	Canola	cytosol	1.86	12.36
CDX87822	Canola	plasma membrane	2.53	11.9
CDY67044	Canola	cytosol	0.34	11.76
CDY65716	Canola	cytosol	2.2	9.56

Protein Annotations

MapMan:10.3.1.3	MapMan:3.13.1.1	Gene3D:3.20.20.80	MapMan:9.5.2.1	GO:A0A078DP56	EnsemblPlants:CDX90772
ProteinID:CDX90772	ProteinID:CDX90772.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	GO:GO:0016779	GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00151469001	InterPro:Glyco_hydro_1	InterPro:Glycoside_hydrolase_SF	InterPro:IPR029044	InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans
PFAM:PF00232	PFAM:PF00483	PANTHER:PTHR10353	PANTHER:PTHR10353:SF44	SUPFAM:SSF51445	SUPFAM:SSF53448
UniParc:UPI0004EE9C9F	SEG:seg	:	:	:	:

Description

BnaA03g24520D

Coordinates

chrLK031864:-:434366..439633

Molecular Weight (calculated)

67611.8 Da

IEP (calculated)

6.516

GRAVY (calculated)

-0.410

Length

592 amino acids

Sequence
(BLAST)

001: MSSKVRAKKE QPPSRGTCTR KLLSDYLSFP FTCRIEGGRG RGVNVWDGFS HRYPEKAGSD LKNGDTTCES YTRWQKDVDV MGELNATGYR FSFAWSRIIP
101: KGKVSRGVNQ GGLDYYHKLI DALLEKNITP FVTLFHWDLP QTLQDEYEGF LDRQIIQDFK DYADLCFKEF GGKVKHWITI NQLYTVPTRG YAIGTDAPGR
201: CSPMVDTKHR CYGGNSSTEP YIVAHNQLLA HATVVDLYRT KYKFQKGKIG PVMITRWFLP YDESDPASIE AAERMNQFFH GWYMEPLTKG RYPDIMRQIV
301: GSRLPNFTEE EAELVAGSYD FLGLNYYVTQ YAQPKPNPYP SETHTAMMDA GVKLTCTTTL TLSLWCSDDS HCVYLFYYKV MLNFVKEYEK KLEMKITFSQ
401: ETEPLGTAGP LALARDKLID ESGKPFFVLN SDVICEYPLL EMIEFHKNHA AEASIMVTKV DDSSKYGVVV MEEEGKEESR VESFVEKPKH FVGDKINAGI
501: YLLNPSVLDM IELRRTSIEK EIFPKIASEK KLYAMVLPGF WMDIGQPKDY LTGQRMYLRY LRKNAPEELL ASSGDHVIGN VIADETAVIG ER

Best Arabidopsis Sequence Match ( AT5G25980.1 )
(BLAST)

001: MQHNTYIYIL TMKLLGFALA ILLVVATCKP EEEITCEENV PFTCSQTDRF NKQDFESDFI FGVASSAYQI EGGRGRGLNV WDGFTHRYPE KGGADLGNGD
101: TTCDSYRTWQ KDLDVMEELG VKGYRFSFAW SRILPKGKRS RGINEDGINY YSGLIDGLIA RNITPFVTLF HWDLPQSLQD EYEGFLDRTI IDDFKDYADL
201: CFERFGDRVK HWITINQLFT VPTRGYALGT DAPGRCSQWV DKRCYGGDSS TEPYIVAHNQ LLAHATVVDL YRTRYKYQGG KIGPVMITRW FLPYDDTLES
301: KQATWRAKEF FLGWFMEPLT KGKYPYIMRK LVGNRLPKFN STEARLLKGS YDFLGLNYYV TQYAHALDPS PPEKLTAMTD SLANLTSLDA NGQPPGPPFS
401: KGSYYHPRGM LNVMEHFKTK YGDPLIYVTE NGFSTSGGPI PFTEAFHDYN RIDYLCSHLC FLRKAIK

Arabidopsis Description

TGG2Myrosinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5C2]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.