CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

nucleus 1
mitochondrion 2
plasma membrane 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52116	Canola	nucleus	87.65	61.58
AT5G58610.3	Thale cress	nucleus	39.84	36.53
KXG31496	Sorghum	cytosol, extracellular	3.59	34.29
Zm00001d008232_P001	Maize	cytosol	10.46	32.81
HORVU4Hr1G056300.1	Barley	extracellular	5.78	32.04
CDX73252	Canola	cytosol	5.78	30.05
KRH52096	Soybean	nucleus	15.84	26.32
CDY26900	Canola	cytosol, mitochondrion, nucleus	7.47	26.32
CDX84460	Canola	nucleus	11.26	24.62
CDX81205	Canola	nucleus	13.25	24.31
CDY43768	Canola	nucleus	11.26	23.99
CDY60050	Canola	nucleus	12.95	23.3
TraesCS2A01G085100.1	Wheat	nucleus	14.44	22.52
TraesCS2D01G083000.1	Wheat	nucleus	14.44	22.45
TraesCS2B01G099800.1	Wheat	nucleus	13.74	21.07
CDY68599	Canola	cytosol	5.78	20.94
Zm00001d022583_P001	Maize	nucleus	13.45	19.29
CDX71404	Canola	extracellular, golgi, vacuole	9.06	17.74
GSMUA_Achr6P32880_001	Banana	nucleus	17.83	16.89
GSMUA_AchrUn_...	Banana	nucleus	16.04	16.74
TraesCS4D01G195300.1	Wheat	nucleus	19.92	14.74
TraesCS4A01G109600.1	Wheat	nucleus	19.92	14.73
Zm00001d028749_P002	Maize	mitochondrion	18.53	14.61
TraesCS4B01G194600.1	Wheat	nucleus	19.72	14.59
CDY18439	Canola	nucleus	9.16	14.29
CDY10104	Canola	nucleus	13.94	14.26
CDX74615	Canola	nucleus	14.14	14.23
CDX93373	Canola	nucleus	9.06	13.89
CDY37657	Canola	nucleus	14.24	13.43
CDY47291	Canola	nucleus	14.04	13.12
CDX97621	Canola	nucleus	13.74	12.39
CDX98519	Canola	nucleus	13.55	12.18
CDY04521	Canola	nucleus	10.36	10.87
CDX77146	Canola	nucleus	9.96	10.85
CDY30516	Canola	nucleus	10.36	9.91
CDY63985	Canola	nucleus	9.26	9.08
CDY70414	Canola	cytosol, nucleus	3.29	5.19

Protein Annotations

EnsemblPlants:CDX80351	EnsemblPlantsGene:GSBRNA2T00133408001	Gene3D:3.30.40.10	InterPro:IPR013083	InterPro:PC-Esterase	InterPro:PMR5_N_dom
InterPro:TBL	InterPro:TBL45/PMR5	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR32285	PANTHER:PTHR32285:SF14
PFAM:PF13839	PFAM:PF14416	ProteinID:CDX80351	ProteinID:CDX80351.1	SEG:seg	SUPFAM:SSF57903
TMHMM:TMhelix	UniParc:UPI0004EE54AA	MapMan:15.5.30	:	:	:

Description

BnaC09g33910D

Coordinates

chrLK031820:+:2047941..2054522

Molecular Weight (calculated)

114602.0 Da

IEP (calculated)

9.040

GRAVY (calculated)

-0.299

Length

1004 amino acids

Sequence
(BLAST)

0001: MSRSDYRTGA IGLLGFYRFY RFYLYRAFRP LDFYRLCYSY FRLSVYIVFY ISDVIDLYYY FISAFINLLY FESGGCHTYP SNAAQNRKRA LYFRLETKTK
0101: AQGFERLRSK RKQKPNRRYR SRENKLTVGS RAVNLSRTRG QTSRILTDIK NRVTGRGKTR VSRSSKRVQR VMTPTSRNQS PRTVLSWLID NNVILPRENI
0201: QCRNQKDHTV AAANIFLDDG RSLLECQVEA YKARKKAQPP NLLKIKLRHG ENDIVCSVCH YGGKLILCDG CPSAFHATCL GLEVHQFSLK PMFQTVTGYA
0301: HHVVVKPVDY LLPRILANHP SCLQDLLNTF LAEKWFCSKD CEEIFVNLRE LIGKPREVCL KKNLTWRLVQ SLEQDTFGTD ASKIEAVAET HCKLSVALDV
0401: MHELFEPVKR RHSGGDLAED VIFSRWSKYK RLNFSGFYTV LLERNDELII VATVRILGKK VAEMPFIGTR FQHRQHGMCR VFMDELEKVL IDLGVERLVL
0501: PAVRCILDTW INSFGFSKVT IPEKKNFLQF TFLEFGRTIL CQKILIKSSV SHPPPSTSTV SLGETNCDII TIEDNSASDD ISTSDDRSEV HQAEKHLEES
0601: SSTKNTPDKK MNVLHHISLS AIFFLLPLLL QQEPSSSAII LSLKKRHGSS GNQYSSSRPS SFQGNRSTCS LFMGTWVHDD SYPLYKPADC PAVVEGEFDC
0701: LMYGRPDSNY LKYRWQPQNC NLPTFNGAEF LLRMKGKNIM FAGDSLGKNQ WESLICLIMS SAPSTRTQMT RGLPLSTFRF LDYGITMSFY KAPFLVDIDA
0801: VQGKRVLKLE EISGNANAWH DADLLIFNTG HWWSHTGSQQ GWDLIQSGNS YYQDMDRFVA MEKALRTWAY WVETHVDRSR TQVFFLSISP THDNPSDWAA
0901: SSSSGSKNCY GETDPITGSA YPVSPYTDQL RSVIVEVLHG MHNPALLLDI TLLSSLRKDG HPSVYSGLVS GSQLAKPGQS DCSHWCLPGL PDTWNQLLYT
1001: ILFY

Best Arabidopsis Sequence Match ( AT5G58600.1 )
(BLAST)

001: MGSLLPLLGI SVVSAIFFLV LQQPEQSSSA IILSLKKRHG SSSGSSGNQY SSSRPSAGFQ GNRSTCSLFL GTWVRDNSYP LYKPADCPGV VEPEFDCQMY
101: GRPDSDYLKY RWQPQNCNLP TFNGAQFLLK MKGKTIMFAG DSLGKNQWES LICLIVSSAP STRTEMTRGL PLSTFRFLDY GITMSFYKAP FLVDIDAVQG
201: KRVLKLDEIS GNANAWHDAD LLIFNTGHWW SHTGSMQGWD LIQSGNSYYQ DMDRFVAMEK ALRTWAYWVE THVDRSRTQV LFLSISPTHD NPSDWAASSS
301: SGSKNCYGET EPITGTAYPV SSYTDQLRSV IVEVLHGMHN PAFLLDITLL SSLRKDGHPS VYSGLISGSQ RSRPDQSADC SHWCLPGLPD TWNQLLYTLL
401: IY

Arabidopsis Description

PMR5Protein PMR5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUZ6]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.