CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08590	Canola	cytosol	91.08	91.36
CDX73917	Canola	plasma membrane	77.23	76.06
AT3G10572.1	Thale cress	cytosol	77.85	75.98
CDY00683	Canola	cytosol	36.0	74.52
CDY00682	Canola	cytosol	27.08	73.95
Solyc07g017290.2.1	Tomato	cytosol	44.0	40.74
KRH74139	Soybean	cytosol	41.23	38.62
Solyc12g017470.1.1	Tomato	cytosol	42.46	38.55
VIT_07s0130g00080.t01	Wine grape	cytosol	44.31	37.02
KRH49075	Soybean	cytosol	41.23	36.71
GSMUA_Achr5P05040_001	Banana	cytosol, extracellular	40.62	35.87
PGSC0003DMT400016535	Potato	cytosol	34.46	35.44
PGSC0003DMT400024738	Potato	mitochondrion	16.62	31.4
Zm00001d014696_P002	Maize	cytosol	32.0	29.05
TraesCS7A01G416200.1	Wheat	cytosol	31.38	28.25
TraesCS7B01G316200.1	Wheat	cytosol	31.38	28.25
Os06t0702800-01	Rice	cytosol	31.69	28.22
EER88914	Sorghum	cytosol	31.08	28.06
TraesCS7D01G409500.1	Wheat	cytosol	31.08	27.98
HORVU7Hr1G096480.4	Barley	plastid	30.15	20.29

Protein Annotations

EnsemblPlants:CDY00956	EnsemblPlantsGene:GSBRNA2T00110967001	GO:GO:0006810	GO:GO:0008150	GO:GO:0015919	InterPro:APEM9
PANTHER:PTHR36361	ProteinID:CDY00956	ProteinID:CDY00956.1	SEG:seg	UniParc:UPI0004EDF03B	MapMan:23.4.1.5.2

Description

BnaC05g42440D

Coordinates

chrLK031923:+:309568..311339

Molecular Weight (calculated)

36257.7 Da

IEP (calculated)

5.267

GRAVY (calculated)

-0.029

Length

325 amino acids

Sequence
(BLAST)

001: MEATDGIWGE IERSESYLVC SMYEEAVSLS SSILKGIFGN VETLGDHQLL DMLESAGMVL VQSLHGLGRA GEIVNELRQV FGEIAAVPVQ VLLTGICLQI
101: SNGSYSGVRE VLEEFFSLWV YKDNHYILSD AGLSEKVFHG KILLDVDEYM EVVELYTFGV LGKDTNDVGL AVSWVEQAPL PEERRQGLLR RLDSLLSLKS
201: PKVQEATSLE ENSSYDVVNS SNKSLANEKN DYILKLSKQH EPWSSRPLSL KFGNTRFSMS RGKVAISLVG LIICYALQRK RAALIRIIRR QMESTKKAIV
301: DFWKLAFSYQ VNPLAAIQPI PSTTT

Best Arabidopsis Sequence Match ( AT3G10572.1 )
(BLAST)

001: MEATDIWGEI ERSESYLVCS MYEEAESLSS SILKRIFGNI DVLSDEASQG DHQFHDMLES AGMVLVQSLH GIGRTVEIVN ELRDVFGEVA AIPVQVLLTG
101: VCLQISNGSY LGVRDILEEF FRIWVYKDNH YILNDAGVST KGFHAKNCLD IDEYMEVVEL YTFGVLAKFS NDMGLAISWV EKAALPEERR QGILRRLHSL
201: LSLKTASSFE ENSKDSSYAV VNNKKSLGNE KNDEIDSFLK LSKQHEPWSL WSSHPLSLKV GNTQFSMSRG KVAVSLVGLI ICYALKRKRA ALIRIIRRQM
301: ESTRKAIVDF WKLAFSYQVN PLAAIQSIPS TTT

Arabidopsis Description

APEM9Protein APEM9 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4B2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.