CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037663_P001	Maize	mitochondrion	97.98	97.98
Zm00001d009803_P001	Maize	mitochondrion	96.97	96.97
TraesCS2D01G272100.1	Wheat	mitochondrion	84.85	88.42
TraesCS2A01G272800.1	Wheat	mitochondrion	84.85	88.42
TraesCS2B01G291000.1	Wheat	golgi	83.84	87.37
GSMUA_Achr8P17750_001	Banana	mitochondrion	71.72	72.45
AT5G47890.1	Thale cress	mitochondrion, plastid	68.69	70.1
Bra020725.1-P	Field mustard	mitochondrion	66.67	67.35
CDY45917	Canola	mitochondrion	66.67	67.35
CDY35765	Canola	mitochondrion	65.66	66.33
CDX86337	Canola	mitochondrion	65.66	66.33
CDX85314	Canola	mitochondrion	65.66	66.33
Bra037522.1-P	Field mustard	mitochondrion	65.66	66.33
CDY67293	Canola	mitochondrion, plastid	63.64	64.29
KRH54446	Soybean	mitochondrion	61.62	62.24
PGSC0003DMT400040137	Potato	mitochondrion	61.62	62.24
KRH63471	Soybean	mitochondrion	59.6	60.2
PGSC0003DMT400078153	Potato	mitochondrion	59.6	60.2
Solyc06g075810.2.1	Tomato	nucleus, unclear	59.6	60.2
HORVU2Hr1G066620.1	Barley	cytosol	83.84	60.14
Os04t0310500-01	Rice	mitochondrion	60.61	60.0
KRH55684	Soybean	plastid	44.44	58.67
VIT_01s0150g00570.t01	Wine grape	mitochondrion	43.43	54.43
KRH72219	Soybean	mitochondrion	42.42	46.67

Protein Annotations

MapMan:2.4.1.4.1.1	Gene3D:3.40.30.10	EntrezGene:8072704	UniProt:C5Z141	EnsemblPlants:EES17794	ProteinID:EES17794
ProteinID:EES17794.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005747	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0055114	InterPro:NADH_Ub_cplx-1_asu_su-2	PFAM:PF05047	PIRSF:PIRSF005822	PANTHER:PTHR12878
InterPro:Ribosome/NADH_DH	SMART:SM00916	EnsemblPlantsGene:SORBI_3009G062000	SUPFAM:SSF52833	unigene:Sbi.12504	InterPro:Thioredoxin-like_sf
UniParc:UPI0001A888C3	RefSeq:XP_002439364.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:6509452..6512706

Molecular Weight (calculated)

11072.4 Da

IEP (calculated)

9.702

GRAVY (calculated)

-0.364

Length

99 amino acids

Sequence
(BLAST)

1: MAWRASLSRS VKEIRVLFCQ SSPASAAARE FVKKNYGDIK ARNPALPFLV RECSGVQPQL WARYDMGVER CVNLDGLTEA QIDKKLEELA KAGESLKTK

Best Arabidopsis Sequence Match ( AT5G47890.1 )
(BLAST)

1: MAWRGSISKS MKELRILLCQ SSPASAPTRT FVEKNYKDLK SLNPKLPILI RECSGVQPQM WARYDMGVER CVNLDGLTEP QILKALENLV KSGATKA

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIJ2]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.