Factsheet for Zm00001d037663_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES17794	Sorghum	mitochondrion	97.98	97.98
Zm00001d009803_P001	Maize	mitochondrion	96.97	96.97
TraesCS2D01G272100.1	Wheat	mitochondrion	83.84	87.37
TraesCS2A01G272800.1	Wheat	mitochondrion	83.84	87.37
TraesCS2B01G291000.1	Wheat	golgi	82.83	86.32
GSMUA_Achr8P17750_001	Banana	mitochondrion	71.72	72.45
AT5G47890.1	Thale cress	mitochondrion, plastid	68.69	70.1
Bra020725.1-P	Field mustard	mitochondrion	67.68	68.37
CDY45917	Canola	mitochondrion	67.68	68.37
CDY35765	Canola	mitochondrion	66.67	67.35
CDX86337	Canola	mitochondrion	66.67	67.35
CDX85314	Canola	mitochondrion	66.67	67.35
Bra037522.1-P	Field mustard	mitochondrion	66.67	67.35
CDY67293	Canola	mitochondrion, plastid	64.65	65.31
PGSC0003DMT400040137	Potato	mitochondrion	62.63	63.27
KRH54446	Soybean	mitochondrion	61.62	62.24
PGSC0003DMT400078153	Potato	mitochondrion	60.61	61.22
Solyc06g075810.2.1	Tomato	nucleus, unclear	60.61	61.22
KRH63471	Soybean	mitochondrion	59.6	60.2
HORVU2Hr1G066620.1	Barley	cytosol	82.83	59.42
KRH55684	Soybean	plastid	44.44	58.67
VIT_01s0150g00570.t01	Wine grape	mitochondrion	44.44	55.7
KRH72219	Soybean	mitochondrion	41.41	45.56
Zm00001d025054_P001	Maize	mitochondrion	42.42	26.92

Protein Annotations

EMBL:EU965985	EnsemblPlants:Zm00001d037663_P001	EnsemblPlants:Zm00001d037663_T001	EnsemblPlantsGene:Zm00001d037663	EntrezGene:100283792	Gene3D:3.40.30.10
InterPro:NADH_Ub_cplx-1_asu_su-2	InterPro:Ribosome/NADH_DH	InterPro:Thioredoxin-like_sf	PANTHER:PTHR12878	PFAM:PF05047	PIRSF:PIRSF005822
ProteinID:AQK84547.1	SMART:SM00916	SUPFAM:SSF52833	UniParc:UPI000182DCC8	UniProt:B6TLX0	MapMan:2.4.1.4.1.1

Description

NADH-ubiquinone oxidoreductase 10.5 kDa subunit%3B NADH-ubiquinone oxidoreductase subunit

Coordinates

chr6:-:133420435..133424501

Molecular Weight (calculated)

11102.4 Da

IEP (calculated)

9.702

GRAVY (calculated)

-0.394

Length

99 amino acids

Sequence
(BLAST)

1: MAWRASLSRS LKEIRVLFCQ SSPASAAARE FVKKNYGDIK ARNPSLPFLV RECSGVQPQL WARYDMGVER CVNLDGLTEA QIDKKLEELA KAGESLKTK

Best Arabidopsis Sequence Match ( AT5G47890.1 )
(BLAST)

1: MAWRGSISKS MKELRILLCQ SSPASAPTRT FVEKNYKDLK SLNPKLPILI RECSGVQPQM WARYDMGVER CVNLDGLTEP QILKALENLV KSGATKA

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIJ2]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.