CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55684	Soybean	plastid	68.89	82.67
KRH63471	Soybean	mitochondrion	68.89	63.27
KRH54446	Soybean	mitochondrion	68.89	63.27
AT5G47890.1	Thale cress	mitochondrion, plastid	52.22	48.45
Solyc06g075810.2.1	Tomato	nucleus, unclear	52.22	47.96
PGSC0003DMT400078153	Potato	mitochondrion	52.22	47.96
PGSC0003DMT400040137	Potato	mitochondrion	51.11	46.94
Bra020725.1-P	Field mustard	mitochondrion	50.0	45.92
GSMUA_Achr8P17750_001	Banana	mitochondrion	50.0	45.92
CDY45917	Canola	mitochondrion	50.0	45.92
TraesCS2B01G291000.1	Wheat	golgi	47.78	45.26
CDY67293	Canola	mitochondrion, plastid	48.89	44.9
CDX86337	Canola	mitochondrion	48.89	44.9
CDX85314	Canola	mitochondrion	48.89	44.9
Bra037522.1-P	Field mustard	mitochondrion	48.89	44.9
TraesCS2A01G272800.1	Wheat	mitochondrion	46.67	44.21
TraesCS2D01G272100.1	Wheat	mitochondrion	46.67	44.21
CDY35765	Canola	mitochondrion	46.67	42.86
EES17794	Sorghum	mitochondrion	46.67	42.42
Zm00001d009803_P001	Maize	mitochondrion	46.67	42.42
HORVU6Hr1G063740.1	Barley	cytosol, mitochondrion, nucleus	30.0	42.19
HORVU6Hr1G063750.3	Barley	cytosol, mitochondrion, nucleus	30.0	42.19
VIT_01s0150g00570.t01	Wine grape	mitochondrion	36.67	41.77
Zm00001d037663_P001	Maize	mitochondrion	45.56	41.41
HORVU2Hr1G066620.1	Barley	cytosol	47.78	31.16
Os04t0310500-01	Rice	mitochondrion	34.44	31.0
Zm00001d025054_P001	Maize	mitochondrion	32.22	18.59

Protein Annotations

MapMan:2.4.1.4.1.1	Gene3D:3.40.30.10	EMBL:ACUP02001191	EnsemblPlantsGene:GLYMA_02G198800	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005747
GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0055114	UniProt:K7K9M8
EnsemblPlants:KRH72219	ProteinID:KRH72219	ProteinID:KRH72219.1	InterPro:NADH_Ub_cplx-1_asu_su-2	PFAM:PF05047	PANTHER:PTHR12878
InterPro:Ribosome/NADH_DH	SMART:SM00916	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI000294FA97	:

Description

hypothetical protein

Coordinates

chr2:+:38089199..38090280

Molecular Weight (calculated)

10428.8 Da

IEP (calculated)

9.220

GRAVY (calculated)

-0.320

Length

90 amino acids

Sequence
(BLAST)

1: MERKSFEKHK RTSVFDVPVI TCKLTHKAFV ERNYKELKTL NPKLPILIRE CSGVEPQLWA RYDLGVEKGI KLEGLSEAQI FKALEDLVNI

Best Arabidopsis Sequence Match ( AT5G47890.1 )
(BLAST)

1: MAWRGSISKS MKELRILLCQ SSPASAPTRT FVEKNYKDLK SLNPKLPILI RECSGVQPQM WARYDMGVER CVNLDGLTEP QILKALENLV KSGATKA

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIJ2]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.