Factsheet for Zm00001d009803_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 23198870
mitochondrion: 27297264
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037663_P001	Maize	mitochondrion	96.97	96.97
EES17794	Sorghum	mitochondrion	96.97	96.97
TraesCS2D01G272100.1	Wheat	mitochondrion	84.85	88.42
TraesCS2A01G272800.1	Wheat	mitochondrion	84.85	88.42
TraesCS2B01G291000.1	Wheat	golgi	83.84	87.37
GSMUA_Achr8P17750_001	Banana	mitochondrion	70.71	71.43
AT5G47890.1	Thale cress	mitochondrion, plastid	68.69	70.1
Bra020725.1-P	Field mustard	mitochondrion	65.66	66.33
CDY45917	Canola	mitochondrion	65.66	66.33
CDY35765	Canola	mitochondrion	64.65	65.31
CDX86337	Canola	mitochondrion	64.65	65.31
CDX85314	Canola	mitochondrion	64.65	65.31
Bra037522.1-P	Field mustard	mitochondrion	64.65	65.31
CDY67293	Canola	mitochondrion, plastid	62.63	63.27
KRH54446	Soybean	mitochondrion	61.62	62.24
KRH63471	Soybean	mitochondrion	59.6	60.2
PGSC0003DMT400040137	Potato	mitochondrion	59.6	60.2
HORVU2Hr1G066620.1	Barley	cytosol	83.84	60.14
KRH55684	Soybean	plastid	45.45	60.0
PGSC0003DMT400078153	Potato	mitochondrion	57.58	58.16
Solyc06g075810.2.1	Tomato	nucleus, unclear	57.58	58.16
VIT_01s0150g00570.t01	Wine grape	mitochondrion	43.43	54.43
KRH72219	Soybean	mitochondrion	42.42	46.67
Zm00001d025054_P001	Maize	mitochondrion	42.42	26.92

Protein Annotations

EMBL:EU963095	EnsemblPlants:Zm00001d009803_P001	EnsemblPlants:Zm00001d009803_T001	EnsemblPlantsGene:Zm00001d009803	EntrezGene:100283003	Gene3D:3.40.30.10
InterPro:NADH_Ub_cplx-1_asu_su-2	InterPro:Ribosome/NADH_DH	InterPro:Thioredoxin-like_sf	PANTHER:PTHR12878	PFAM:PF05047	PIRSF:PIRSF005822
ProteinID:AQK92741.1	SMART:SM00916	SUPFAM:SSF52833	UniParc:UPI000182C16A	UniProt:B6TDN0	MapMan:2.4.1.4.1.1

Description

NADH-ubiquinone oxidoreductase 10.5 kDa subunit%3B NADH-ubiquinone oxidoreductase subunit

Coordinates

chr8:-:82156141..82159658

Molecular Weight (calculated)

11117.5 Da

IEP (calculated)

9.324

GRAVY (calculated)

-0.366

Length

99 amino acids

Sequence
(BLAST)

1: MAWRASLSRS VKEIRVLFCQ SSPASAPARE FVKKNYGDIK ARNPSLPFLV RECSGVQPQL WARYDMGVER CVNLDGLTEA QIDKKLEELA MAGESLKTK

Best Arabidopsis Sequence Match ( AT5G47890.1 )
(BLAST)

1: MAWRGSISKS MKELRILLCQ SSPASAPTRT FVEKNYKDLK SLNPKLPILI RECSGVQPQM WARYDMGVER CVNLDGLTEP QILKALENLV KSGATKA

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIJ2]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.