CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359
mitochondrion: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55684	Soybean	plastid	72.45	94.67
KRH54446	Soybean	mitochondrion	93.88	93.88
AT5G47890.1	Thale cress	mitochondrion, plastid	71.43	72.16
Bra020725.1-P	Field mustard	mitochondrion	69.39	69.39
Solyc06g075810.2.1	Tomato	nucleus, unclear	69.39	69.39
PGSC0003DMT400078153	Potato	mitochondrion	69.39	69.39
GSMUA_Achr8P17750_001	Banana	mitochondrion	69.39	69.39
CDY67293	Canola	mitochondrion, plastid	69.39	69.39
CDY45917	Canola	mitochondrion	69.39	69.39
CDX86337	Canola	mitochondrion	69.39	69.39
CDX85314	Canola	mitochondrion	69.39	69.39
Bra037522.1-P	Field mustard	mitochondrion	69.39	69.39
KRH72219	Soybean	mitochondrion	63.27	68.89
PGSC0003DMT400040137	Potato	mitochondrion	67.35	67.35
CDY35765	Canola	mitochondrion	66.33	66.33
TraesCS2B01G291000.1	Wheat	golgi	64.29	66.32
VIT_01s0150g00570.t01	Wine grape	mitochondrion	53.06	65.82
TraesCS2D01G272100.1	Wheat	mitochondrion	63.27	65.26
TraesCS2A01G272800.1	Wheat	mitochondrion	63.27	65.26
Zm00001d037663_P001	Maize	mitochondrion	60.2	59.6
Zm00001d009803_P001	Maize	mitochondrion	60.2	59.6
EES17794	Sorghum	mitochondrion	60.2	59.6
Os04t0310500-01	Rice	mitochondrion	50.0	49.0
HORVU2Hr1G066620.1	Barley	cytosol	64.29	45.65
HORVU6Hr1G063750.3	Barley	cytosol, mitochondrion, nucleus	27.55	42.19
HORVU6Hr1G063740.1	Barley	cytosol, mitochondrion, nucleus	27.55	42.19
Zm00001d025054_P001	Maize	mitochondrion	32.65	20.51

Protein Annotations

EntrezGene:100499948	MapMan:2.4.1.4.1.1	Gene3D:3.40.30.10	EMBL:ACUP02002694	EMBL:BT090230	UniProt:C6SYI2
EnsemblPlantsGene:GLYMA_04G179100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005747	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0055114	EnsemblPlants:KRH63471	ProteinID:KRH63471	ProteinID:KRH63471.1	InterPro:NADH_Ub_cplx-1_asu_su-2
PFAM:PF05047	PIRSF:PIRSF005822	PANTHER:PTHR12878	InterPro:Ribosome/NADH_DH	SMART:SM00916	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	UniParc:UPI0001B15866	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:44398109..44406865

Molecular Weight (calculated)

11093.7 Da

IEP (calculated)

9.957

GRAVY (calculated)

-0.289

Length

98 amino acids

Sequence
(BLAST)

1: MAWRGNLLKN IKELRFLMCQ SSPASSPTRA FVERNYKELK TLNPKLPILI RECSGVEPQL WARYDLGVEK GIKLEGLSEA QIFKALEDLV KAGQSMKA

Best Arabidopsis Sequence Match ( AT5G47890.1 )
(BLAST)

1: MAWRGSISKS MKELRILLCQ SSPASAPTRT FVEKNYKDLK SLNPKLPILI RECSGVQPQM WARYDMGVER CVNLDGLTEP QILKALENLV KSGATKA

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIJ2]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.