Factsheet for GSMUA_Achr8P17750_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G291000.1	Wheat	golgi	76.53	78.95
TraesCS2D01G272100.1	Wheat	mitochondrion	75.51	77.89
TraesCS2A01G272800.1	Wheat	mitochondrion	75.51	77.89
AT5G47890.1	Thale cress	mitochondrion, plastid	71.43	72.16
Zm00001d037663_P001	Maize	mitochondrion	72.45	71.72
EES17794	Sorghum	mitochondrion	72.45	71.72
Zm00001d009803_P001	Maize	mitochondrion	71.43	70.71
VIT_01s0150g00570.t01	Wine grape	mitochondrion	56.12	69.62
Bra037522.1-P	Field mustard	mitochondrion	69.39	69.39
CDX85314	Canola	mitochondrion	69.39	69.39
CDX86337	Canola	mitochondrion	69.39	69.39
KRH63471	Soybean	mitochondrion	69.39	69.39
KRH54446	Soybean	mitochondrion	69.39	69.39
KRH55684	Soybean	plastid	52.04	68.0
CDY45917	Canola	mitochondrion	67.35	67.35
Bra020725.1-P	Field mustard	mitochondrion	67.35	67.35
PGSC0003DMT400078153	Potato	mitochondrion	66.33	66.33
CDY67293	Canola	mitochondrion, plastid	66.33	66.33
CDY35765	Canola	mitochondrion	66.33	66.33
Solyc06g075810.2.1	Tomato	nucleus, unclear	65.31	65.31
PGSC0003DMT400040137	Potato	mitochondrion	63.27	63.27
HORVU2Hr1G066620.1	Barley	cytosol	76.53	54.35
Os04t0310500-01	Rice	mitochondrion	52.04	51.0
KRH72219	Soybean	mitochondrion	45.92	50.0
HORVU6Hr1G063750.3	Barley	cytosol, mitochondrion, nucleus	26.53	40.62
HORVU6Hr1G063740.1	Barley	cytosol, mitochondrion, nucleus	26.53	40.62
Zm00001d025054_P001	Maize	mitochondrion	34.69	21.79

Protein Annotations

EnsemblPlants:GSMUA_Achr8P17750_001	EnsemblPlants:GSMUA_Achr8T17750_001	EnsemblPlantsGene:GSMUA_Achr8G17750_001	Gene3D:3.40.30.10	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005747	GO:GO:0016020	InterPro:NADH_Ub_cplx-1_asu_su-2
InterPro:Ribosome/NADH_DH	InterPro:Thioredoxin-like_sf	PANTHER:PTHR12878	PFAM:PF05047	PIRSF:PIRSF005822	SEG:seg
SMART:SM00916	SUPFAM:SSF52833	UniParc:UPI0002956590	UniProt:M0TRC8	MapMan:2.4.1.4.1.1	:

Description

Putative NADH-ubiquinone oxidoreductase 10.5 kDa subunit [Source:GMGC_GENE;Acc:GSMUA_Achr8G17750_001]

Coordinates

chr8:+:18692247..18698726

Molecular Weight (calculated)

11377.9 Da

IEP (calculated)

9.615

GRAVY (calculated)

-0.428

Length

98 amino acids

Sequence
(BLAST)

1: MAWRELLSRN IKELRFLFCQ TSPASAHTRE FVYKNYKDLK TLNPKLPILI RECRGVEPQL WARYDMGVER CVRLDGLTEA DINKKLEELA KAAGALKP

Best Arabidopsis Sequence Match ( AT5G47890.1 )
(BLAST)

1: MAWRGSISKS MKELRILLCQ SSPASAPTRT FVEKNYKDLK SLNPKLPILI RECSGVQPQM WARYDMGVER CVNLDGLTEP QILKALENLV KSGATKA

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIJ2]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.