CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
peroxisome 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037522.1-P	Field mustard	mitochondrion	100.0	100.0
CDX86337	Canola	mitochondrion	100.0	100.0
CDY45917	Canola	mitochondrion	94.9	94.9
CDY67293	Canola	mitochondrion, plastid	94.9	94.9
CDY35765	Canola	mitochondrion	92.86	92.86
AT5G47890.1	Thale cress	mitochondrion, plastid	85.71	86.6
KRH63471	Soybean	mitochondrion	69.39	69.39
GSMUA_Achr8P17750_001	Banana	mitochondrion	69.39	69.39
VIT_01s0150g00570.t01	Wine grape	mitochondrion	54.08	67.09
Zm00001d037663_P001	Maize	mitochondrion	67.35	66.67
KRH55684	Soybean	plastid	51.02	66.67
KRH54446	Soybean	mitochondrion	66.33	66.33
TraesCS2D01G272100.1	Wheat	mitochondrion	64.29	66.32
TraesCS2A01G272800.1	Wheat	mitochondrion	64.29	66.32
EES17794	Sorghum	mitochondrion	66.33	65.66
TraesCS2B01G291000.1	Wheat	golgi	63.27	65.26
Zm00001d009803_P001	Maize	mitochondrion	65.31	64.65
PGSC0003DMT400040137	Potato	mitochondrion	63.27	63.27
Solyc06g075810.2.1	Tomato	nucleus, unclear	63.27	63.27
PGSC0003DMT400078153	Potato	mitochondrion	63.27	63.27
KRH72219	Soybean	mitochondrion	44.9	48.89
Os04t0310500-01	Rice	mitochondrion	45.92	45.0
HORVU2Hr1G066620.1	Barley	cytosol	63.27	44.93
HORVU6Hr1G063750.3	Barley	cytosol, mitochondrion, nucleus	23.47	35.94
HORVU6Hr1G063740.1	Barley	cytosol, mitochondrion, nucleus	23.47	35.94
Zm00001d025054_P001	Maize	mitochondrion	34.69	21.79

Protein Annotations

EnsemblPlants:CDX85314	EnsemblPlantsGene:GSBRNA2T00142978001	Gene3D:3.40.30.10	InterPro:NADH_Ub_cplx-1_asu_su-2	InterPro:Ribosome/NADH_DH	InterPro:Thioredoxin-like_sf
PANTHER:PTHR12878	PFAM:PF05047	PIRSF:PIRSF005822	ProteinID:CDX85314	ProteinID:CDX85314.1	SMART:SM00916
SUPFAM:SSF52833	UniParc:UPI000253F8AD	MapMan:2.4.1.4.1.1	:	:	:

Description

BnaC07g26250D

Coordinates

chrLK031841:+:1092964..1094283

Molecular Weight (calculated)

11025.4 Da

IEP (calculated)

9.704

GRAVY (calculated)

-0.353

Length

98 amino acids

Sequence
(BLAST)

1: MAWRGNISKS LKELRILLCQ SSPASASTRT FVEKNYKDLK TLNPKFPFLI RECSGIQPQM WARYDMGVER CVNLDGMNES QILKSLEDLV KAGGATKA

Best Arabidopsis Sequence Match ( AT5G47890.1 )
(BLAST)

1: MAWRGSISKS MKELRILLCQ SSPASAPTRT FVEKNYKDLK SLNPKLPILI RECSGVQPQM WARYDMGVER CVNLDGLTEP QILKALENLV KSGATKA

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIJ2]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.