Factsheet for TraesCS2B01G291000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G272100.1	Wheat	mitochondrion	98.95	98.95
TraesCS2A01G272800.1	Wheat	mitochondrion	98.95	98.95
Zm00001d009803_P001	Maize	mitochondrion	87.37	83.84
EES17794	Sorghum	mitochondrion	87.37	83.84
Zm00001d037663_P001	Maize	mitochondrion	86.32	82.83
GSMUA_Achr8P17750_001	Banana	mitochondrion	78.95	76.53
HORVU2Hr1G066620.1	Barley	cytosol	100.0	68.84
AT5G47890.1	Thale cress	mitochondrion, plastid	69.47	68.04
KRH54446	Soybean	mitochondrion	67.37	65.31
Bra020725.1-P	Field mustard	mitochondrion	66.32	64.29
KRH63471	Soybean	mitochondrion	66.32	64.29
CDY45917	Canola	mitochondrion	66.32	64.29
KRH55684	Soybean	plastid	50.53	64.0
CDX86337	Canola	mitochondrion	65.26	63.27
CDX85314	Canola	mitochondrion	65.26	63.27
Bra037522.1-P	Field mustard	mitochondrion	65.26	63.27
Os04t0310500-01	Rice	mitochondrion	66.32	63.0
CDY35765	Canola	mitochondrion	64.21	62.24
CDY67293	Canola	mitochondrion, plastid	62.11	60.2
PGSC0003DMT400078153	Potato	mitochondrion	62.11	60.2
Solyc06g075810.2.1	Tomato	nucleus, unclear	62.11	60.2
VIT_01s0150g00570.t01	Wine grape	mitochondrion	48.42	58.23
PGSC0003DMT400040137	Potato	mitochondrion	60.0	58.16
KRH72219	Soybean	mitochondrion	45.26	47.78

Protein Annotations

EnsemblPlants:TraesCS2B01G291000.1	EnsemblPlantsGene:TraesCS2B01G291000	Gene3D:3.40.30.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005747	GO:GO:0016020	InterPro:NADH_Ub_cplx-1_asu_su-2	InterPro:Ribosome/NADH_DH
InterPro:Thioredoxin-like_sf	PANTHER:PTHR12878	PFAM:PF05047	PIRSF:PIRSF005822	SMART:SM00916	SUPFAM:SSF52833
MapMan:2.4.1.4.1.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:404163617..404166770

Molecular Weight (calculated)

10712.0 Da

IEP (calculated)

9.338

GRAVY (calculated)

-0.368

Length

95 amino acids

Sequence
(BLAST)

1: MAWRASLSRN VKEIRFLFCQ SSPASGPARE FVKKNYGDIK TRNPTLPVLI RECSGVEPQL WARYDMGVER CVRLDGLTEA QIDKKLEELA KAGVA

Best Arabidopsis Sequence Match ( AT5G47890.1 )
(BLAST)

1: MAWRGSISKS MKELRILLCQ SSPASAPTRT FVEKNYKDLK SLNPKLPILI RECSGVQPQM WARYDMGVER CVNLDGLTEP QILKALENLV KSGATKA

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIJ2]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.