Subcellular Localization
min:
: max
Winner_takes_all: unclear, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 7
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| unclear:
26455813
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400078153 | Potato | mitochondrion | 98.98 | 98.98 |
| KRH63471 | Soybean | mitochondrion | 69.39 | 69.39 |
| KRH54446 | Soybean | mitochondrion | 69.39 | 69.39 |
| KRH55684 | Soybean | plastid | 52.04 | 68.0 |
| GSMUA_Achr8P17750_001 | Banana | mitochondrion | 65.31 | 65.31 |
| AT5G47890.1 | Thale cress | mitochondrion, plastid | 63.27 | 63.92 |
| Bra020725.1-P | Field mustard | mitochondrion | 63.27 | 63.27 |
| CDY45917 | Canola | mitochondrion | 63.27 | 63.27 |
| CDX86337 | Canola | mitochondrion | 63.27 | 63.27 |
| CDX85314 | Canola | mitochondrion | 63.27 | 63.27 |
| Bra037522.1-P | Field mustard | mitochondrion | 63.27 | 63.27 |
| TraesCS2B01G291000.1 | Wheat | golgi | 60.2 | 62.11 |
| CDY35765 | Canola | mitochondrion | 61.22 | 61.22 |
| TraesCS2D01G272100.1 | Wheat | mitochondrion | 59.18 | 61.05 |
| TraesCS2A01G272800.1 | Wheat | mitochondrion | 59.18 | 61.05 |
| Zm00001d037663_P001 | Maize | mitochondrion | 61.22 | 60.61 |
| CDY67293 | Canola | mitochondrion, plastid | 60.2 | 60.2 |
| EES17794 | Sorghum | mitochondrion | 60.2 | 59.6 |
| VIT_01s0150g00570.t01 | Wine grape | mitochondrion | 47.96 | 59.49 |
| Zm00001d009803_P001 | Maize | mitochondrion | 58.16 | 57.58 |
| KRH72219 | Soybean | mitochondrion | 47.96 | 52.22 |
| Os04t0310500-01 | Rice | mitochondrion | 45.92 | 45.0 |
| HORVU2Hr1G066620.1 | Barley | cytosol | 60.2 | 42.75 |
| HORVU6Hr1G063750.3 | Barley | cytosol, mitochondrion, nucleus | 27.55 | 42.19 |
| HORVU6Hr1G063740.1 | Barley | cytosol, mitochondrion, nucleus | 27.55 | 42.19 |
| Zm00001d025054_P001 | Maize | mitochondrion | 29.59 | 18.59 |
Protein Annotations
| MapMan:2.4.1.4.1.1 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005747 | GO:GO:0008137 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016020 | GO:GO:0055114 | UniProt:K4C9U6 | InterPro:NADH_Ub_cplx-1_asu_su-2 | PFAM:PF05047 |
| PIRSF:PIRSF005822 | PANTHER:PTHR12878 | InterPro:Ribosome/NADH_DH | SMART:SM00916 | SUPFAM:SSF52833 | EnsemblPlantsGene:Solyc06g075810.2 |
| EnsemblPlants:Solyc06g075810.2.1 | InterPro:Thioredoxin-like_sf | UniParc:UPI0002766D52 | : | : | : |
Description
No Description!
Coordinates
chr6:-:47107089..47108702
Molecular Weight (calculated)
11088.3 Da
IEP (calculated)
10.051
GRAVY (calculated)
-0.483
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MAWRSNLSRN LKELRILFSP SSSESAATRA FIEKNYRDLK TQNPKLPILI REASSIEPQL WARYDLGVER GIRLEGLTEE QISKALEDLG KVGASLKS
1: MAWRGSISKS MKELRILLCQ SSPASAPTRT FVEKNYKDLK SLNPKLPILI RECSGVQPQM WARYDMGVER CVNLDGLTEP QILKALENLV KSGATKA
Arabidopsis Description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIJ2]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.