Factsheet for GSMUA_Achr6P29030_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P29050_001	Banana	nucleus	34.82	69.64
GSMUA_Achr6P29010_001	Banana	nucleus	87.5	52.69
GSMUA_Achr8P29210_001	Banana	nucleus	68.75	41.4
GSMUA_Achr3P16640_001	Banana	cytosol	65.18	41.24
GSMUA_Achr1P17800_001	Banana	cytosol	33.93	29.01
GSMUA_Achr8P32360_001	Banana	cytosol	49.11	28.35
GSMUA_Achr10P...	Banana	nucleus	33.04	27.01
GSMUA_Achr6P18540_001	Banana	nucleus	47.32	26.11
EES05247	Sorghum	cytosol	38.39	25.6
GSMUA_AchrUn_...	Banana	nucleus	31.25	25.36
GSMUA_Achr3P08680_001	Banana	cytosol	41.96	24.87
TraesCS2B01G326800.2	Wheat	cytosol, endoplasmic reticulum, nucleus	48.21	24.55
GSMUA_Achr11P...	Banana	nucleus	40.18	24.32
TraesCS2D01G308000.1	Wheat	cytosol	47.32	24.09
GSMUA_Achr5P08230_001	Banana	nucleus	41.07	23.83
Os04t0442300-01	Rice	cytosol	48.21	23.38
GSMUA_AchrUn_...	Banana	nucleus	41.07	23.0
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	27.68	21.99
EES10856	Sorghum	plasma membrane	47.32	21.29
KXG26371	Sorghum	cytosol, golgi, nucleus	41.96	20.61
Zm00001d050768_P003	Maize	cytosol, endoplasmic reticulum, nucleus	43.75	20.25
TraesCS2A01G309700.1	Wheat	cytosol	41.07	19.83
HORVU2Hr1G077000.3	Barley	golgi, mitochondrion, plasma membrane, plastid	50.0	19.38
GSMUA_Achr11P...	Banana	nucleus	31.25	19.34
Os02t0557800-01	Rice	cytosol, golgi, nucleus	42.86	19.05
GSMUA_Achr1P07020_001	Banana	mitochondrion, plastid	34.82	18.66
GSMUA_Achr8P09640_001	Banana	cytosol	26.79	17.05
Zm00001d003598_P003	Maize	nucleus	46.43	16.35
Zm00001d025472_P002	Maize	cytosol, endoplasmic reticulum, plasma membrane	33.93	15.83

Protein Annotations

Gene3D:3.40.50.2300	MapMan:35.1	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G29030_001
EnsemblPlants:GSMUA_Achr6P29030_001	EnsemblPlants:GSMUA_Achr6T29030_001	InterPro:IPR001789	UniProt:M0TB48	PFAM:PF00072	PFscan:PS50110
PANTHER:PTHR43874	PANTHER:PTHR43874:SF3	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI000296F3A5	SEG:seg

Description

Receptor histidine kinase, putative [Source:GMGC_GENE;Acc:GSMUA_Achr6G29030_001]

Coordinates

chr6:+:29310346..29311038

Molecular Weight (calculated)

12383.1 Da

IEP (calculated)

10.917

GRAVY (calculated)

-0.612

Length

112 amino acids

Sequence
(BLAST)

001: MPEMTGYDLL KAVKEQSCQK PIPVIVMSSE NEPQRINRLV ASFRTEDFII KPLQANDVLR LRSYARTGLP PPPPSSSAKA GTKRKMTSEL MAESGRGGSE
101: RRRPRLTGPA MA

Best Arabidopsis Sequence Match ( AT1G59940.1 )
(BLAST)

001: MAKDGGVSCL RRSEMIGIGI GELESPPLDS DQVHVLAVDD SLVDRIVIER LLRITSCKVT AVDSGWRALE FLGLDDDKAA VEFDRLKVDL IITDYCMPGM
101: TGYELLKKIK ESTSFKEVPV VIMSSENVMT RIDRCLEEGA EDFLLKPVKL ADVKRLRSYL TRDVKVAAEG NKRKLTTPPP PPPLSATSSM ESSDSTVESP
201: LSMVDDEDSL TMSPESATSL VDSPMRSPGL A

Arabidopsis Description

ARR3response regulator 3 [Source:TAIR;Acc:AT1G59940]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.