Factsheet for GSMUA_Achr6P30880_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G151900.1	Wheat	cytosol	41.89	58.42
AT1G30545.2	Thale cress	mitochondrion	51.32	58.37
VIT_09s0018g01550.t01	Wine grape	cytosol	54.34	58.06
PGSC0003DMT400032794	Potato	cytosol, mitochondrion	52.83	57.14
Solyc01g104990.2.1	Tomato	cytosol	51.7	56.61
Bra039862.1-P	Field mustard	cytosol	49.06	56.52
CDY47154	Canola	nucleus	49.06	56.52
CDY12465	Canola	cytosol	48.68	56.09
Bra026224.1-P	Field mustard	cytosol	46.04	54.71
CDX77588	Canola	cytosol	45.66	54.26
AT1G30550.2	Thale cress	extracellular	48.68	53.97
CDY05312	Canola	cytosol	40.0	53.81
TraesCS7D01G153600.1	Wheat	mitochondrion, plastid	56.23	48.06
CDY02304	Canola	cytosol, mitochondrion, plasma membrane, plastid	28.3	45.18
OQU75980	Sorghum	mitochondrion	50.57	44.82
TraesCS7B01G055700.1	Wheat	cytosol, plastid	55.09	44.24
Bra014884.1-P	Field mustard	cytosol	45.28	43.96
Zm00001d045079_P001	Maize	mitochondrion	51.32	40.36
CDX98214	Canola	cytosol	46.04	40.13
GSMUA_Achr2P00940_001	Banana	nucleus	43.4	34.12
CDY57504	Canola	nucleus, plastid	40.75	24.43

Protein Annotations

EnsemblPlants:GSMUA_Achr6P30880_001	EnsemblPlants:GSMUA_Achr6T30880_001	EnsemblPlantsGene:GSMUA_Achr6G30880_001	Gene3D:3.40.50.150	GO:GO:0001510	GO:GO:0003674
GO:GO:0003824	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009452
GO:GO:0009987	GO:GO:0016740	InterPro:RNA_cap_Gua-N2-MeTrfase	InterPro:SAM-dependent_MTases	PANTHER:PTHR14741	PFAM:PF09445
SEG:seg	SUPFAM:SSF53335	UniParc:UPI000294F30C	UniProt:M0TBN3	MapMan:35.2	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_18.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr6G30880_001]

Coordinates

chr6:+:30822276..30829371

Molecular Weight (calculated)

29784.7 Da

IEP (calculated)

10.336

GRAVY (calculated)

-0.289

Length

265 amino acids

Sequence
(BLAST)

001: MFSPKKRKRR VTRQRQRRRR RDHRVTAHSR PEERGVDFFG PSVAKYWRQR YSLFSRFDDG ILMDEEGWYS VTPEAIAAAH AARATSLAGR GCPLVLDGFA
101: GVGGNAIQFA SRGCHVVAVD IDPRKIGFAV HNAKIYGVED RIDFVTGDFF RLAPRLKGDI LFLSPPWGGP SYRDFRSYTL DLLMPRDGYS IFQLAQQITP
201: NIIMFLPRNV NLNQVEELSW LSSPPLKFEI EANHVQTKVK AITAYFGDIA AGSSGLSKIC SGVTS

Best Arabidopsis Sequence Match ( AT1G30545.2 )
(BLAST)

001: MTRSMKLKKR SRLKKEVKST IEKDNGRRHK ITKYWIQRYD LFSRYDQGIE MDEEGWYSVT PEEIAIKQAQ RYRGKVVIDC FSGVGGNTIQ FAKVCSSVVA
101: IDIDPVKVEL AMNNAMVYGV ANRVDFVIGD FIQLAPSLKG DVVFLSPPWG GPMYRDFESY NLDMLQPRDG YSLFQIAQSI TPNIIMFLPR NVDLAQVEEL
201: AWLSSPPLNL EIEENFVGGR MKAVTAYFSC NAV

Arabidopsis Description

S-adenosyl-L-methionine-dependent methyltransferase superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8ASE3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.