Factsheet for GSMUA_Achr8P08430_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
peroxisome 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	peroxisome
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G037300.2	Barley	cytosol	11.32	85.71
HORVU5Hr1G047900.5	Barley	cytosol, mitochondrion, plastid	21.51	82.61
VIT_12s0035g01080.t01	Wine grape	plastid	83.58	77.72
PGSC0003DMT400064585	Potato	plastid	81.32	76.69
HORVU5Hr1G119790.1	Barley	plastid	81.51	76.19
Solyc05g010180.2.1	Tomato	plastid	81.32	75.88
EER90543	Sorghum	mitochondrion, plastid	83.4	74.41
TraesCS5D01G528500.1	Wheat	plastid	81.32	74.06
AT1G57770.1	Thale cress	plastid	80.19	74.04
TraesCS5B01G529400.1	Wheat	plastid	81.7	74.02
CDX95296	Canola	plastid	80.38	73.83
TraesCS1A01G407600.1	Wheat	plastid	81.32	73.68
KRH51300	Soybean	mitochondrion, plastid	77.55	73.66
TraesCSU01G062000.1	Wheat	plastid	80.94	73.33
Zm00001d012868_P001	Maize	plastid	83.21	73.01
CDY39935	Canola	plastid	80.57	72.99
Bra027908.1-P	Field mustard	plastid	80.57	72.99
Os03t0841900-00	Rice	plasma membrane	83.77	68.84
KRH01865	Soybean	plastid	25.28	66.01
GSMUA_Achr8P26670_001	Banana	cytosol	29.62	29.79

Protein Annotations

Gene3D:3.50.50.60	MapMan:35.1	InterPro:Amino_oxidase	InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr8G08430_001	EnsemblPlants:GSMUA_Achr8P08430_001
EnsemblPlants:GSMUA_Achr8T08430_001	InterPro:IPR036188	UniProt:M0TNP6	PFAM:PF01593	PANTHER:PTHR10668	PANTHER:PTHR10668:SF84
SUPFAM:SSF51905	UniParc:UPI000296B465	SEG:seg	:	:	:

Description

Putative Carotenoid isomerase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr8G08430_001]

Coordinates

chr8:+:5625906..5633451

Molecular Weight (calculated)

57226.0 Da

IEP (calculated)

6.824

GRAVY (calculated)

0.038

Length

530 amino acids

Sequence
(BLAST)

001: MCRSGKLEAD VVVIGSGIGG LCCAGLLARY QQDVLVLESH DLPGGAAHSF EVKGYKFDSG PSLFSGFQSR GPQANPLSQV LDALGEPVPC ATYDSWMVYV
101: PEGEFLSRIG PTEFLKDLET FVSLDAVHEW KKLLEAVLPM SAAAMALPPL SIRGDWGVVS TAAARYAPSL LKSFIQMGPQ GALGATKLLR PFSEIIDSLE
201: LKHPFVRNWV DLLCFLLAGV KSDGIISAEI VYMFAEWYKP GCVLEYPLKG SGAVVDALVQ GLKKYGGRLA LGSHVDKIVV ENGRATGVKL SSGHFVRAKK
301: AVVSNASMWD TLNLLPPDVV PNTYKEQVEA TPQCESFMHL HLGFDAQNIS EDLGIHHIVV NDWSRGVDAD QNVVLISVPS VHGKGLAPPG KHVLHAYTPG
401: TEPYSLWEGL DRRSMEYRKL KEERSEVMWR AVERALGPGF SREKCDVKLV GTPLTHQRFL RRNRGTYGPA IKAGEATFPG HSTPIPQLFC CGDSTFPGIG
501: VPAVAASGAI VANTLVSVSQ HSQLLDAIGI

Best Arabidopsis Sequence Match ( AT1G57770.1 )
(BLAST)

001: MAANFCGLTL QSPFLYNFSR PTIRSSSFIR SSSSSSASSN GNLKEPFSGE PEADVVVIGS GIGGLCCGAL LARYDQDVIV LESHDHPGGA AHSFEIKGYK
101: FDSGPSLFSG LQSRGPQANP LAQVLDALGE SFPCKKYDSW MVYLPEGDFL SRIGPTDFFK DLEKYAGPSA VQEWEKLLGA ILPLSSAAMA LPPLSIRGDL
201: GVLSTAAARY APSLLKSFIK MGPKGALGAT KLLRPFSEIV DSLELKDPFI RNWIDLLAFL LAGVKSDGIL SAEMIYMFAE WYKPGCTLEY PIDGTGAVVE
301: ALVRGLEKFG GRLSLKSHVE NIVIENGKAV GVKLRNGQFV RARKAVVSNA SMWDTLKLLP PGALPESYVK GVNTTPQCES FMHLHLGFDA EGIADDLEIH
401: HIVVNDWDRG VDADQNVVLI SVPSVLSPNL APPGKHVLHA YCPGTEPFGL WEGLDRRSAE YKNLKSQRSE VMWRAVERAL GLGFKREKCE VSLVGTPLTH
501: QRFLRRNRGT YGPAIEAGKG TFPGHSTPIP QLLCCGDSTF PGIGVPAVAA SGAIVANSLV PVSKHSQLLD AIGL

Arabidopsis Description

FAD/NAD(P)-binding oxidoreductase family protein [Source:UniProtKB/TrEMBL;Acc:Q9FVR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.