Factsheet for VIT_12s0035g01080.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G037300.2	Barley	cytosol	10.53	85.71
GSMUA_Achr8P08430_001	Banana	peroxisome	77.72	83.58
PGSC0003DMT400064585	Potato	plastid	79.82	80.96
Solyc05g010180.2.1	Tomato	plastid	80.18	80.46
HORVU5Hr1G047900.5	Barley	cytosol, mitochondrion, plastid	19.47	80.43
KRH51300	Soybean	mitochondrion, plastid	77.19	78.85
AT1G57770.1	Thale cress	plastid	77.89	77.35
CDX95296	Canola	plastid	77.89	76.95
Bra027908.1-P	Field mustard	plastid	78.07	76.07
CDY39935	Canola	plastid	77.89	75.9
HORVU5Hr1G119790.1	Barley	plastid	73.68	74.07
TraesCS5D01G528500.1	Wheat	plastid	74.39	72.85
TraesCS5B01G529400.1	Wheat	plastid	74.39	72.48
EER90543	Sorghum	mitochondrion, plastid	75.26	72.22
TraesCSU01G062000.1	Wheat	plastid	74.04	72.14
TraesCS1A01G407600.1	Wheat	plastid	73.86	71.97
Zm00001d012868_P001	Maize	plastid	75.26	71.03
KRH01865	Soybean	plastid	24.91	69.95
Os03t0841900-00	Rice	plasma membrane	75.09	66.36
VIT_08s0032g00800.t01	Wine grape	cytosol	22.98	28.29

Protein Annotations

EntrezGene:100262553	wikigene:100262553	Gene3D:3.50.50.60	MapMan:35.1	EMBL:AM427983	InterPro:Amino_oxidase
ProteinID:CAN60294	ProteinID:CAN60294.1	ProteinID:CBI29695	ProteinID:CBI29695.3	UniProt:D7TGS3	InterPro:FAD/NAD-bd_sf
EMBL:FN595990	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPR036188	EntrezGene:LOC100262553
wikigene:LOC100262553	PFAM:PF01593	PANTHER:PTHR10668	PANTHER:PTHR10668:SF84	SUPFAM:SSF51905	TIGR:TC54746
UniParc:UPI0001BE37C4	ArrayExpress:VIT_12s0035g01080	EnsemblPlantsGene:VIT_12s0035g01080	EnsemblPlants:VIT_12s0035g01080.t01	unigene:Vvi.3845	RefSeq:XP_002264237
RefSeq:XP_002264237.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:20842676..20849118

Molecular Weight (calculated)

62037.7 Da

IEP (calculated)

7.580

GRAVY (calculated)

-0.094

Length

570 amino acids

Sequence
(BLAST)

001: MIYNPQFSSG INLKSNTKPI LARISNGSVP ATASPSPKQY KPFQGKPEAD VVVIGSGIGG LCCAGLLARY QQDVLVLESH DRPGGAAHSF KIRDYEFDSG
101: PSLFSGFQSR GPQANPLAQV LDALGESVPC ANYDSWMVYI PEGEFLSRIG ATEFFKDLEK YASRDAVREW QKLLDAVLPM SAAAMALPPL SIRGDLGVIS
201: TAATRYAPSL LKSFVQMGPQ GALGATKLLR PFSEIMDSLD LKDPFIRNWV DLLAFLLAGV KSNGILSAEM VYMFAEWYKP GCTLEYPLQG TGAVVDALVR
301: GMQKFGGRLS LESHVEKIVV ENDQAIGVKL RSGQFIRAKK AVVSNASMWD TLNLLPKEVV PKSYQDRIKT TPQCESFMHL HLGFDAEGIP EDLGIHHIVV
401: NNWDRGVDAD QNVVLISVPS VLSPNLAPPG KHVLHAYTPG TEPFELWEGL DRRSGEYRKL KAERSEVMWR AVERVLGPGF KQEKCEVKLV GTPLTHQRFL
501: RRNRGTYGPA MQAGKDTFPG HSTPISHLYC CGDSTFPGIG VPAVAASGAI VANSLVSVSQ HSQLLDAIGI

Best Arabidopsis Sequence Match ( AT1G57770.1 )
(BLAST)

001: MAANFCGLTL QSPFLYNFSR PTIRSSSFIR SSSSSSASSN GNLKEPFSGE PEADVVVIGS GIGGLCCGAL LARYDQDVIV LESHDHPGGA AHSFEIKGYK
101: FDSGPSLFSG LQSRGPQANP LAQVLDALGE SFPCKKYDSW MVYLPEGDFL SRIGPTDFFK DLEKYAGPSA VQEWEKLLGA ILPLSSAAMA LPPLSIRGDL
201: GVLSTAAARY APSLLKSFIK MGPKGALGAT KLLRPFSEIV DSLELKDPFI RNWIDLLAFL LAGVKSDGIL SAEMIYMFAE WYKPGCTLEY PIDGTGAVVE
301: ALVRGLEKFG GRLSLKSHVE NIVIENGKAV GVKLRNGQFV RARKAVVSNA SMWDTLKLLP PGALPESYVK GVNTTPQCES FMHLHLGFDA EGIADDLEIH
401: HIVVNDWDRG VDADQNVVLI SVPSVLSPNL APPGKHVLHA YCPGTEPFGL WEGLDRRSAE YKNLKSQRSE VMWRAVERAL GLGFKREKCE VSLVGTPLTH
501: QRFLRRNRGT YGPAIEAGKG TFPGHSTPIP QLLCCGDSTF PGIGVPAVAA SGAIVANSLV PVSKHSQLLD AIGL

Arabidopsis Description

FAD/NAD(P)-binding oxidoreductase family protein [Source:UniProtKB/TrEMBL;Acc:Q9FVR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.