Factsheet for PGSC0003DMT400064585

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
peroxisome 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g010180.2.1	Tomato	plastid	92.88	91.9
HORVU5Hr1G037300.2	Barley	cytosol	10.32	82.86
GSMUA_Achr8P08430_001	Banana	peroxisome	76.69	81.32
HORVU5Hr1G047900.5	Barley	cytosol, mitochondrion, plastid	19.75	80.43
VIT_12s0035g01080.t01	Wine grape	plastid	80.96	79.82
CDX95296	Canola	plastid	80.78	78.68
AT1G57770.1	Thale cress	plastid	80.25	78.57
KRH51300	Soybean	mitochondrion, plastid	77.58	78.14
Bra027908.1-P	Field mustard	plastid	80.61	77.44
CDY39935	Canola	plastid	80.43	77.27
HORVU5Hr1G119790.1	Barley	plastid	75.98	75.31
TraesCS5D01G528500.1	Wheat	plastid	75.62	73.02
TraesCS5B01G529400.1	Wheat	plastid	75.98	72.99
TraesCS1A01G407600.1	Wheat	plastid	75.62	72.65
TraesCSU01G062000.1	Wheat	plastid	75.62	72.65
EER90543	Sorghum	mitochondrion, plastid	76.33	72.22
KRH01865	Soybean	plastid	25.8	71.43
Zm00001d012868_P001	Maize	plastid	74.73	69.54
Os03t0841900-00	Rice	plasma membrane	76.69	66.82
PGSC0003DMT400072543	Potato	cytosol	29.72	27.15

Protein Annotations

Gene3D:3.50.50.60	MapMan:35.1	InterPro:Amino_oxidase	InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0016491	GO:GO:0055114	InterPro:IPR036188	UniProt:M1CCL6
PFAM:PF01593	EnsemblPlantsGene:PGSC0003DMG400025098	PGSC:PGSC0003DMG400025098	EnsemblPlants:PGSC0003DMT400064585	PANTHER:PTHR10668	PANTHER:PTHR10668:SF84
SUPFAM:SSF51905	UniParc:UPI00029639C1	SEG:seg	:	:	:

Description

All-trans-retinol 13,14-reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400025098]

Coordinates

chr5:+:1494012..1498760

Molecular Weight (calculated)

60553.9 Da

IEP (calculated)

7.154

GRAVY (calculated)

0.006

Length

562 amino acids

Sequence
(BLAST)

001: MALRFLPFSP LFNFSSSNRK RTVSTSATLA SKQPVPGKPE ADIVVIGSGI GGLCCAGLLA RYGQDVLVLE SHDVAGGAAH SFDIKGYKFD SGPSLFSGFQ
101: SRGPQANPLA QVLDALDESI PCVNYDSWMV YVPEGEFLSR IGPTEFFKDL EKYAGPDSAR EWRKLLDAIL PISAAAMALP PLSIRGDLGV LSTAAARYAP
201: SLLKSFAQMG PQGALGATKL LRPFSEIIDS LGIKDPFIRN WLDLLAFLLA GVKTNGILSA EMVYMFSEWY KPGCSLEYPL HGSGAIVDAL VRGLQKFGGR
301: ISLKSHVENI VVEKGRAVGV KLRGGQFVRA RKAVVSNASM WDTLSLLPPE AVPKSYQDGI ETTQQCESFM HLHLGFDAEG ISDDLGIHHI VVNDWDRGVD
401: ADQNVVLISV PSVLSPDLAP PGKHVLHAYT PGTEPFEIWE GLDRRSNEYK NLKAERSEVM WKAVEKALGP GFNREKCEVK LVGTPLTHQR FLRRNRGTYG
501: PAILAGKGTF PGHSTPIPQL MCCGDSTFPG IGVPAVAASG AIVANSLVSV TEHSRLLDAI GI

Best Arabidopsis Sequence Match ( AT1G57770.1 )
(BLAST)

001: MAANFCGLTL QSPFLYNFSR PTIRSSSFIR SSSSSSASSN GNLKEPFSGE PEADVVVIGS GIGGLCCGAL LARYDQDVIV LESHDHPGGA AHSFEIKGYK
101: FDSGPSLFSG LQSRGPQANP LAQVLDALGE SFPCKKYDSW MVYLPEGDFL SRIGPTDFFK DLEKYAGPSA VQEWEKLLGA ILPLSSAAMA LPPLSIRGDL
201: GVLSTAAARY APSLLKSFIK MGPKGALGAT KLLRPFSEIV DSLELKDPFI RNWIDLLAFL LAGVKSDGIL SAEMIYMFAE WYKPGCTLEY PIDGTGAVVE
301: ALVRGLEKFG GRLSLKSHVE NIVIENGKAV GVKLRNGQFV RARKAVVSNA SMWDTLKLLP PGALPESYVK GVNTTPQCES FMHLHLGFDA EGIADDLEIH
401: HIVVNDWDRG VDADQNVVLI SVPSVLSPNL APPGKHVLHA YCPGTEPFGL WEGLDRRSAE YKNLKSQRSE VMWRAVERAL GLGFKREKCE VSLVGTPLTH
501: QRFLRRNRGT YGPAIEAGKG TFPGHSTPIP QLLCCGDSTF PGIGVPAVAA SGAIVANSLV PVSKHSQLLD AIGL

Arabidopsis Description

FAD/NAD(P)-binding oxidoreductase family protein [Source:UniProtKB/TrEMBL;Acc:Q9FVR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.