Factsheet for Zm00001d012868_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G037300.2	Barley	cytosol	10.76	92.86
EER90543	Sorghum	mitochondrion, plastid	86.59	88.05
HORVU5Hr1G047900.5	Barley	cytosol, mitochondrion, plastid	20.03	87.68
HORVU5Hr1G119790.1	Barley	plastid	79.64	84.83
GSMUA_Achr8P08430_001	Banana	peroxisome	73.01	83.21
TraesCS5D01G528500.1	Wheat	plastid	79.47	82.47
TraesCS5B01G529400.1	Wheat	plastid	79.47	82.05
TraesCSU01G062000.1	Wheat	plastid	78.97	81.54
TraesCS1A01G407600.1	Wheat	plastid	78.81	81.37
Os03t0841900-00	Rice	plasma membrane	81.95	76.74
VIT_12s0035g01080.t01	Wine grape	plastid	71.03	75.26
Solyc05g010180.2.1	Tomato	plastid	70.36	74.82
PGSC0003DMT400064585	Potato	plastid	69.54	74.73
KRH51300	Soybean	mitochondrion, plastid	68.87	74.55
CDX95296	Canola	plastid	70.53	73.83
AT1G57770.1	Thale cress	plastid	69.87	73.52
Bra027908.1-P	Field mustard	plastid	70.36	72.65
CDY39935	Canola	plastid	70.36	72.65
KRH01865	Soybean	plastid	22.52	67.0
Zm00001d007502_P001	Maize	plastid	27.32	28.21
Zm00001d052932_P001	Maize	plastid	27.15	27.94

Protein Annotations

EntrezGene:100281491	Gene3D:3.50.50.60	MapMan:35.1	UniProt:A0A1D6GDI3	ProteinID:AQK61681.1	InterPro:Amino_oxidase
InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0016491
GO:GO:0016853	GO:GO:0055114	InterPro:IPR036188	PFAM:PF01593	PANTHER:PTHR10668	PANTHER:PTHR10668:SF84
SUPFAM:SSF51905	UniParc:UPI0002209BB1	EnsemblPlantsGene:Zm00001d012868	EnsemblPlants:Zm00001d012868_P001	EnsemblPlants:Zm00001d012868_T001	SEG:seg

Description

carotene isomerase3carotene isomerase3

Coordinates

chr5:+:1369611..1375366

Molecular Weight (calculated)

65035.6 Da

IEP (calculated)

7.942

GRAVY (calculated)

-0.037

Length

604 amino acids

Sequence
(BLAST)

001: MAASALASRA LRPPHGRHPP APSPRPRPRS ATAAAPRTRC RAVAADERPA DPAFPERQNR GISGLRLLIA SQLSTRAVER PEADVVVIGS GLGGLCCAGL
101: LARYGQDVLV LESHDRPGGA AHSFDIKGFN FDSGPSLFSG FQSRGPQANP LAQVLDALGE SVPCASYDSW MVYVPEGQFL SRIGPTEFLK DLEMFVGVDA
201: VQEWKKLLDA VIPMSAAAMA LPPLSIRGDL GIISTAVGRY TPSLLKSFIQ MGPQGALGAT KLLRPFKEIV DSLELKNPFV RNWIDLLCFL LAGVKSDGAL
301: SAEMVYMFAE WYKPGCLLEY PLGGTGAIID ALVSGIEKFG GRLALRSHVE KILIENGRAV GVKLQSGQVI RAKKAVVSNA SMWDTLDLLP PDAVPKSYED
401: RVKATPQCES FMHLHLGFDA ENAREDLGIH HIVVDDWNKG VDGEQNVVLI SVPSVLSKDL APPGKHILHA YTPGTEPFSL WEGLDRKSAE YRRLKEERSE
501: VMWKAVELAL GPKFSREKCD VKLVGTPLTH RRFLRRNRGT YGPAIKAGEA TFPGQATPIP QLFCCGDSTF PGIGVPAVAA SGAIVANTLV PVSQHSELLD
601: AVGI

Best Arabidopsis Sequence Match ( AT1G57770.1 )
(BLAST)

001: MAANFCGLTL QSPFLYNFSR PTIRSSSFIR SSSSSSASSN GNLKEPFSGE PEADVVVIGS GIGGLCCGAL LARYDQDVIV LESHDHPGGA AHSFEIKGYK
101: FDSGPSLFSG LQSRGPQANP LAQVLDALGE SFPCKKYDSW MVYLPEGDFL SRIGPTDFFK DLEKYAGPSA VQEWEKLLGA ILPLSSAAMA LPPLSIRGDL
201: GVLSTAAARY APSLLKSFIK MGPKGALGAT KLLRPFSEIV DSLELKDPFI RNWIDLLAFL LAGVKSDGIL SAEMIYMFAE WYKPGCTLEY PIDGTGAVVE
301: ALVRGLEKFG GRLSLKSHVE NIVIENGKAV GVKLRNGQFV RARKAVVSNA SMWDTLKLLP PGALPESYVK GVNTTPQCES FMHLHLGFDA EGIADDLEIH
401: HIVVNDWDRG VDADQNVVLI SVPSVLSPNL APPGKHVLHA YCPGTEPFGL WEGLDRRSAE YKNLKSQRSE VMWRAVERAL GLGFKREKCE VSLVGTPLTH
501: QRFLRRNRGT YGPAIEAGKG TFPGHSTPIP QLLCCGDSTF PGIGVPAVAA SGAIVANSLV PVSKHSQLLD AIGL

Arabidopsis Description

FAD/NAD(P)-binding oxidoreductase family protein [Source:UniProtKB/TrEMBL;Acc:Q9FVR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.