Factsheet for Zm00001d052932_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007502_P001	Maize	plastid	90.46	90.77
Os11t0572700-01	Rice	plastid	85.01	85.15
TraesCS1D01G074300.1	Wheat	plastid	84.16	84.16
TraesCS1B01G090300.1	Wheat	mitochondrion	84.5	83.78
TraesCS1A01G071700.1	Wheat	mitochondrion	83.3	83.02
HORVU1Hr1G015490.5	Barley	plastid	83.48	82.77
GSMUA_Achr8P26670_001	Banana	cytosol	74.28	82.73
VIT_08s0032g00800.t01	Wine grape	cytosol	64.57	81.86
CDY09954	Canola	plastid	75.47	75.08
Bra031539.1-P	Field mustard	plastid	75.13	74.87
CDY06229	Canola	plastid	74.96	74.7
AT1G06820.1	Thale cress	cytosol	74.62	73.61
KRH72050	Soybean	plastid	73.94	71.38
KRH32922	Soybean	plastid	73.42	70.77
PGSC0003DMT400072543	Potato	cytosol	74.11	70.73
Solyc10g081650.1.1	Tomato	plastid	73.42	70.08
Zm00001d012868_P001	Maize	plastid	27.94	27.15

Protein Annotations

KEGG:00906+5.2.1.13	Gene3D:3.50.50.60	MapMan:9.1.6.1.7	ProteinID:AQK58378.1	InterPro:Amino_oxidase	UniProt:C1JFF5
InterPro:CRTISO	InterPro:FAD/NAD-bd_sf	EMBL:FJ603466	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016117	GO:GO:0016491
GO:GO:0016853	GO:GO:0046608	GO:GO:0055114	InterPro:IPR036188	PFAM:PF01593	PANTHER:PTHR10668
PANTHER:PTHR10668:SF104	SUPFAM:SSF51905	TIGRFAMs:TIGR02730	UniParc:UPI00019A9C8A	EnsemblPlantsGene:Zm00001d052932	EnsemblPlants:Zm00001d052932_P001
EnsemblPlants:Zm00001d052932_T001	SEG:seg	:	:	:	:

Description

carotene isomerase1 carotene isomerase1

Coordinates

chr4:+:205269595..205274287

Molecular Weight (calculated)

63673.2 Da

IEP (calculated)

8.151

GRAVY (calculated)

-0.016

Length

587 amino acids

Sequence
(BLAST)

001: MPPLAARLHA PLLLVPAASP RPATRLCAAS GPRGVGGFRR GALASEKPPV VAVAEKAGGE GGGGQGEGPY DAIVIGSGIG GLVAATQLAA KGARVLVLEK
101: YLIPGGSSGY YRRDGFTFDV GSSVMFGFSD KGNLNLITQA LEAVGRKMEV LPDPSTVHFH LPGDLSVLVH RKYEDFINEL ISKFPHEKEG IIKFYGTCWK
201: IFNSLNSLEL KSLEEPLYLF GQFFQKPLEC LTLAYYLPQN AGDIARKFIK DQELLSFIDA ECFIVSTVNA LQTPMINASM VLCDRHFGGI NYPVGGVGGI
301: ALSLADGLVE KGSEIRYKAN VTNVVLENGK AVGVRLSNGK EFFAKTVISN ATRWDTFGKL LKEKELPEEE KNFQKNYVKA PSFLSIHMGV KASVLPAGTD
401: CHHFVLEDNW NNLEKPYGSI FLSIPTVLDP SLAPEGHHIL HIFTTAGIEA WEGISRKEYE EKKEMVANEI IRRLEKKLFP GLQDSIVLKE VGSPKTHRRF
501: LARNDGTYGP MPRGKPKGLL AMPFNTTSID GLYCVGDSCF PGQGVIAVAF SGIMCAHRVA ADIGLEQKSP ALDAGLLGLL RWLRTLA

Best Arabidopsis Sequence Match ( AT1G06820.1 )
(BLAST)

001: MDLCFQNPVK CGDRLFSALN TSTYYKLGTS NLGFNGPVLE NRKKKKKLPR MVTVKSVSSS VVASTVQGTK RDGGESLYDA IVIGSGIGGL VAATQLAVKE
101: ARVLVLEKYL IPGGSSGFYE RDGYTFDVGS SVMFGFSDKG NLNLITQALK AVGRKMEVIP DPTTVHFHLP NNLSVRIHRE YDDFIAELTS KFPHEKEGIL
201: GFYGDCWKIF NSLNSLELKS LEEPIYLFGQ FFQKPLECLT LAYYLPQNAG AIARKYIKDP QLLSFIDAEC FIVSTVNALQ TPMINASMVL CDRHYGGINY
301: PVGGVGGIAK SLAEGLVDQG SEIQYKANVK SIILDHGKAV GVRLADGREF FAKTIISNAT RWDTFGKLLK GEKLPKEEEN FQKVYVKAPS FLSIHMGVKA
401: EVLPPDTDCH HFVLEDDWKN LEEPYGSIFL SIPTILDSSL APDGRHILHI FTTSSIEDWE GLPPKEYEAK KEDVAARIIQ RLEKKLFPGL SSSITFKEVG
501: TPRTHRRFLA RDKGTYGPMP RGTPKGLLGM PFNTTAIDGL YCVGDSCFPG QGVIAVAFSG VMCAHRVAAD IGLEKKSRVL DVGLLGLLGW LRTLA

Arabidopsis Description

CRTISOProlycopene isomerase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M9Y8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.