Factsheet for Solyc10g081650.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
plastid: 26371478

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072543	Potato	cytosol	97.89	97.89
VIT_08s0032g00800.t01	Wine grape	cytosol	65.69	87.26
GSMUA_Achr8P26670_001	Banana	cytosol	71.38	83.3
Bra031539.1-P	Field mustard	plastid	75.12	78.44
CDY06229	Canola	plastid	74.96	78.27
AT1G06820.1	Thale cress	cytosol	75.61	78.15
CDY09954	Canola	plastid	74.8	77.97
Os11t0572700-01	Rice	plastid	71.87	75.43
TraesCS1D01G074300.1	Wheat	plastid	70.89	74.28
KRH72050	Soybean	plastid	73.17	74.01
KRH32922	Soybean	plastid	73.17	73.89
Zm00001d052932_P001	Maize	plastid	70.08	73.42
EES08717	Sorghum	plastid	69.92	73.25
TraesCS1A01G071700.1	Wheat	mitochondrion	69.92	73.01
Zm00001d007502_P001	Maize	plastid	69.43	72.99
HORVU1Hr1G015490.5	Barley	plastid	70.24	72.97
TraesCS1B01G090300.1	Wheat	mitochondrion	70.24	72.97
Solyc05g010180.2.1	Tomato	plastid	26.99	29.23
Solyc07g021640.1.1	Tomato	peroxisome, plasma membrane, plastid	2.44	10.2

Protein Annotations

KEGG:00906+5.2.1.13	Gene3D:3.50.50.60	MapMan:9.1.6.1.7	ProteinID:AAL91366.1	InterPro:Amino_oxidase	InterPro:CRTISO
InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016020	GO:GO:0016117	GO:GO:0016491	GO:GO:0016853
GO:GO:0031969	GO:GO:0046608	GO:GO:0055114	InterPro:IPR036188	PFAM:PF01593	PANTHER:PTHR10668
PANTHER:PTHR10668:SF104	UniProt:Q8S4R4	SUPFAM:SSF51905	EnsemblPlantsGene:Solyc10g081650.1	EnsemblPlants:Solyc10g081650.1.1	TIGRFAMs:TIGR02730
UniParc:UPI00000A6030	SEG:seg	:	:	:	:

Description

CRTISOProlycopene isomerase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S4R4]

Coordinates

chr10:-:62682440..62686988

Molecular Weight (calculated)

67459.1 Da

IEP (calculated)

6.998

GRAVY (calculated)

-0.088

Length

615 amino acids

Sequence
(BLAST)

001: MCTLSFMYPN SLLDGTCKTV ALGDSKPRYN KQRSSCFDPL IIGNCTDQQQ LCGLSWGVDK AKGRRGGTVS NLKAVVDVDK RVESYGSSDV EGNESGSYDA
101: IVIGSGIGGL VAATQLAVKG AKVLVLEKYV IPGGSSGFYE RDGYKFDVGS SVMFGFSDKG NLNLITQALA AVGRKLEVIP DPTTVHFHLP NDLSVRIHRE
201: YDDFIEELVS KFPHEKEGII KFYSECWKIF NSLNSLELKS LEEPIYLFGQ FFKKPLECLT LAYYLPQNAG SIARKYIRDP GLLSFIDAEC FIVSTVNALQ
301: TPMINASMVL CDRHFGGINY PVGGVGEIAK SLAKGLDDHG SQILYRANVT SIILDNGKAV GVKLSDGRKF YAKTIVSNAT RWDTFGKLLK AENLPKEEEN
401: FQKAYVKAPS FLSIHMGVKA DVLPPDTDCH HFVLEDDWTN LEKPYGSIFL SIPTVLDSSL APEGHHILHI FTTSSIEDWE GLSPKDYEAK KEVVAERIIS
501: RLEKTLFPGL KSSILFKEVG TPKTHRRYLA RDSGTYGPMP RGTPKGLLGM PFNTTAIDGL YCVGDSCFPG QGVIAVAFSG VMCAHRVAAD LGFEKKSDVL
601: DSALLRLLGW LRTLA

Best Arabidopsis Sequence Match ( AT1G06820.1 )
(BLAST)

001: MDLCFQNPVK CGDRLFSALN TSTYYKLGTS NLGFNGPVLE NRKKKKKLPR MVTVKSVSSS VVASTVQGTK RDGGESLYDA IVIGSGIGGL VAATQLAVKE
101: ARVLVLEKYL IPGGSSGFYE RDGYTFDVGS SVMFGFSDKG NLNLITQALK AVGRKMEVIP DPTTVHFHLP NNLSVRIHRE YDDFIAELTS KFPHEKEGIL
201: GFYGDCWKIF NSLNSLELKS LEEPIYLFGQ FFQKPLECLT LAYYLPQNAG AIARKYIKDP QLLSFIDAEC FIVSTVNALQ TPMINASMVL CDRHYGGINY
301: PVGGVGGIAK SLAEGLVDQG SEIQYKANVK SIILDHGKAV GVRLADGREF FAKTIISNAT RWDTFGKLLK GEKLPKEEEN FQKVYVKAPS FLSIHMGVKA
401: EVLPPDTDCH HFVLEDDWKN LEEPYGSIFL SIPTILDSSL APDGRHILHI FTTSSIEDWE GLPPKEYEAK KEDVAARIIQ RLEKKLFPGL SSSITFKEVG
501: TPRTHRRFLA RDKGTYGPMP RGTPKGLLGM PFNTTAIDGL YCVGDSCFPG QGVIAVAFSG VMCAHRVAAD IGLEKKSRVL DVGLLGLLGW LRTLA

Arabidopsis Description

CRTISOProlycopene isomerase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M9Y8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.