CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06229	Canola	plastid	88.31	88.45
VIT_08s0032g00800.t01	Wine grape	cytosol	69.15	88.12
AT1G06820.1	Thale cress	cytosol	84.92	84.2
GSMUA_Achr8P26670_001	Banana	cytosol	74.07	82.92
Os11t0572700-01	Rice	plastid	75.76	76.28
Zm00001d052932_P001	Maize	plastid	75.08	75.47
EES08717	Sorghum	plastid	74.92	75.3
Zm00001d007502_P001	Maize	plastid	74.24	74.87
Solyc10g081650.1.1	Tomato	plastid	77.97	74.8
KRH72050	Soybean	plastid	76.95	74.67
PGSC0003DMT400072543	Potato	cytosol	77.63	74.47
HORVU1Hr1G015490.5	Barley	plastid	74.41	74.16
TraesCS1D01G074300.1	Wheat	plastid	73.56	73.94
TraesCS1B01G090300.1	Wheat	mitochondrion	73.73	73.48
TraesCS1A01G071700.1	Wheat	mitochondrion	73.05	73.17
KRH32922	Soybean	plastid	75.25	72.91
CDY39935	Canola	plastid	27.97	28.21
CDX95296	Canola	plastid	26.61	27.21

Protein Annotations

KEGG:00906+5.2.1.13	Gene3D:3.50.50.60	MapMan:9.1.6.1.7	GO:A0A078FAA4	UniProt:A0A078FAA4	InterPro:Amino_oxidase
EnsemblPlants:CDY09954	ProteinID:CDY09954	ProteinID:CDY09954.1	InterPro:CRTISO	InterPro:FAD/NAD-bd_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016117	GO:GO:0016491	GO:GO:0046608	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00031726001	InterPro:IPR036188
PFAM:PF01593	PANTHER:PTHR10668	PANTHER:PTHR10668:SF104	MetaCyc:PWY-6475	SUPFAM:SSF51905	TIGRFAMs:TIGR02730
UniPathway:UPA00803	UniParc:UPI0004EEEF5E	SEG:seg	:	:	:

Description

BnaC08g44970DBnaC08g44970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAA4]

Coordinates

chrLK032000:+:227007..230374

Molecular Weight (calculated)

64749.1 Da

IEP (calculated)

7.138

GRAVY (calculated)

-0.071

Length

590 amino acids

Sequence
(BLAST)

001: MNLCLRNPVT CADRSSSLFS ALKTSNNKLG TSKFGFLKNP KKNHVVAVRS VSSTAVVEER TKRESGGGES KVYDAIVIGS GIGGLVAATQ LAVKEAKVLV
101: LEKYLIPGGS SGYYERDGYT FDVGSSVMFG FSDKGNLNLI TQALKAVGRE MEVIPDPTTV HFHLPSDLSV QVHREYDEFV NELISKFPHE KEGILGFYGV
201: CWKIFNSLNS LELKSLEEPI YLFGQFFQKP LECLTLAYYL PQNAGDIARK YIKDPQLLSF IDAECFIVST VNALQTPMIN ASMVLCDRHY GGINYPVGGV
301: GGIAKSLADG LVDQGSEILY KANVKSIILD DGKAVGVRLA DGREFFAKTI ISNATRWDTF GKLLKGEKLP KEEENFQKVY VKAPSFLSIH MGVKAEVLPP
401: DTDCHHFVLE DDWKNLEEPY GSIFLSIPTI LDPYLAPDGR HILHIFTTSS IEDWEGLTPK EYEAKKEEVA AGIIQRLEKK LFPGLSSSIT FKEVGTPRTH
501: RRYLARDKGT YGPMPRGTPK GLLGMPFNTT AIDGLYCVGD SCFPGQGVIA VAFSGVMCAH RVAADIGLER KSKVLDAGLL GLLGWLRTLA

Best Arabidopsis Sequence Match ( AT1G06820.1 )
(BLAST)

001: MDLCFQNPVK CGDRLFSALN TSTYYKLGTS NLGFNGPVLE NRKKKKKLPR MVTVKSVSSS VVASTVQGTK RDGGESLYDA IVIGSGIGGL VAATQLAVKE
101: ARVLVLEKYL IPGGSSGFYE RDGYTFDVGS SVMFGFSDKG NLNLITQALK AVGRKMEVIP DPTTVHFHLP NNLSVRIHRE YDDFIAELTS KFPHEKEGIL
201: GFYGDCWKIF NSLNSLELKS LEEPIYLFGQ FFQKPLECLT LAYYLPQNAG AIARKYIKDP QLLSFIDAEC FIVSTVNALQ TPMINASMVL CDRHYGGINY
301: PVGGVGGIAK SLAEGLVDQG SEIQYKANVK SIILDHGKAV GVRLADGREF FAKTIISNAT RWDTFGKLLK GEKLPKEEEN FQKVYVKAPS FLSIHMGVKA
401: EVLPPDTDCH HFVLEDDWKN LEEPYGSIFL SIPTILDSSL APDGRHILHI FTTSSIEDWE GLPPKEYEAK KEDVAARIIQ RLEKKLFPGL SSSITFKEVG
501: TPRTHRRFLA RDKGTYGPMP RGTPKGLLGM PFNTTAIDGL YCVGDSCFPG QGVIAVAFSG VMCAHRVAAD IGLEKKSRVL DVGLLGLLGW LRTLA

Arabidopsis Description

CRTISOProlycopene isomerase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M9Y8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.