Factsheet for Zm00001d007502_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052932_P001	Maize	plastid	90.77	90.46
EES08717	Sorghum	plastid	88.55	88.25
Os11t0572700-01	Rice	plastid	84.79	84.64
TraesCS1D01G074300.1	Wheat	plastid	84.1	83.82
TraesCS1B01G090300.1	Wheat	mitochondrion	84.27	83.28
TraesCS1A01G071700.1	Wheat	mitochondrion	83.08	82.51
GSMUA_Achr8P26670_001	Banana	cytosol	74.19	82.35
HORVU1Hr1G015490.5	Barley	plastid	83.08	82.09
VIT_08s0032g00800.t01	Wine grape	cytosol	64.62	81.64
Bra031539.1-P	Field mustard	plastid	75.04	74.53
CDY06229	Canola	plastid	74.87	74.36
CDY09954	Canola	plastid	74.87	74.24
AT1G06820.1	Thale cress	cytosol	74.02	72.77
KRH72050	Soybean	plastid	72.82	70.07
PGSC0003DMT400072543	Potato	cytosol	73.33	69.76
KRH32922	Soybean	plastid	72.48	69.62
Solyc10g081650.1.1	Tomato	plastid	72.99	69.43
Zm00001d012868_P001	Maize	plastid	28.21	27.32

Protein Annotations

KEGG:00906+5.2.1.13	Gene3D:3.50.50.60	MapMan:9.1.6.1.7	UniProt:A0A1D6F6X4	InterPro:Amino_oxidase	InterPro:CRTISO
InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016117	GO:GO:0016491	GO:GO:0016853	GO:GO:0046608
GO:GO:0055114	InterPro:IPR036188	ProteinID:ONM26992.1	PFAM:PF01593	PANTHER:PTHR10668	PANTHER:PTHR10668:SF104
SUPFAM:SSF51905	TIGRFAMs:TIGR02730	UniParc:UPI0008441305	EnsemblPlantsGene:Zm00001d007502	EnsemblPlants:Zm00001d007502_P001	EnsemblPlants:Zm00001d007502_T001
SEG:seg	:	:	:	:	:

Description

carotene isomerase2 carotene isomerase2

Coordinates

chr2:+:233393208..233398004

Molecular Weight (calculated)

63760.1 Da

IEP (calculated)

7.339

GRAVY (calculated)

-0.029

Length

585 amino acids

Sequence
(BLAST)

001: MPPLAARLYA PLNLAPAVPA ASLRPATRLC AASGPRNEKA AAVAVAEKAG GEGGGGEDEG PYDAIVIGSG IGGLVAATQL AAKGARVLVL EKYLIPGGSS
101: GYYRRDGFTF DVGSSVMFGF SDKGNLNLIT QALEAVGRKM RVLPDPSTVH FHLPGDLSVL VHRKYEDFIN ELVSKFPHEK EGILKFYDTC WTIFNSLNSL
201: ELKSLEEPLY LFRQFFQKPR ECLTLAYYLP QNAGDIARKF IKDQELLSFI DAECFIVSTV NALQTPMINA SMVLCDRHFG GINYPVGGVG GIAISLADGL
301: VEKGSEIRYK ANVTNVILEN GKALSTSVLQ VGVRLSNGKE FFAKTVISNA TRWDTFGKLV KEELPEEEKN FQKNYVKAPS FLSIHMGVKA SVLPAGTDCH
401: HFILEDNWNN LEKPYGSIFL SIPTVLDPSL APEGHHILHI FTTAGIEDWE GLSRKEYEEK KEVVANEIIR RLEKKLFPGL QDSIVLKEVG SPKTHRRFLA
501: RNDGTYGPMP RGKPKGLLAM PFNTTSIDGL YCVGDSCFPG QGVIAVAFSG IMCAHRVAAD IGLEQKSPVL DAGLLGLLRW LRTLA

Best Arabidopsis Sequence Match ( AT1G06820.1 )
(BLAST)

001: MDLCFQNPVK CGDRLFSALN TSTYYKLGTS NLGFNGPVLE NRKKKKKLPR MVTVKSVSSS VVASTVQGTK RDGGESLYDA IVIGSGIGGL VAATQLAVKE
101: ARVLVLEKYL IPGGSSGFYE RDGYTFDVGS SVMFGFSDKG NLNLITQALK AVGRKMEVIP DPTTVHFHLP NNLSVRIHRE YDDFIAELTS KFPHEKEGIL
201: GFYGDCWKIF NSLNSLELKS LEEPIYLFGQ FFQKPLECLT LAYYLPQNAG AIARKYIKDP QLLSFIDAEC FIVSTVNALQ TPMINASMVL CDRHYGGINY
301: PVGGVGGIAK SLAEGLVDQG SEIQYKANVK SIILDHGKAV GVRLADGREF FAKTIISNAT RWDTFGKLLK GEKLPKEEEN FQKVYVKAPS FLSIHMGVKA
401: EVLPPDTDCH HFVLEDDWKN LEEPYGSIFL SIPTILDSSL APDGRHILHI FTTSSIEDWE GLPPKEYEAK KEDVAARIIQ RLEKKLFPGL SSSITFKEVG
501: TPRTHRRFLA RDKGTYGPMP RGTPKGLLGM PFNTTAIDGL YCVGDSCFPG QGVIAVAFSG VMCAHRVAAD IGLEKKSRVL DVGLLGLLGW LRTLA

Arabidopsis Description

CRTISOProlycopene isomerase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M9Y8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.