Factsheet for TraesCS1D01G074300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G090300.1	Wheat	mitochondrion	97.1	96.28
TraesCS1A01G071700.1	Wheat	mitochondrion	96.08	95.76
HORVU1Hr1G015490.5	Barley	plastid	91.31	90.54
Os11t0572700-01	Rice	plastid	85.69	85.84
Zm00001d052932_P001	Maize	plastid	84.16	84.16
Zm00001d007502_P001	Maize	plastid	83.82	84.1
EES08717	Sorghum	plastid	83.99	83.99
GSMUA_Achr8P26670_001	Banana	cytosol	74.62	83.11
VIT_08s0032g00800.t01	Wine grape	cytosol	64.74	82.07
CDY09954	Canola	plastid	73.94	73.56
Bra031539.1-P	Field mustard	plastid	73.08	72.84
CDY06229	Canola	plastid	72.74	72.5
AT1G06820.1	Thale cress	cytosol	73.25	72.27
PGSC0003DMT400072543	Potato	cytosol	74.96	71.54
KRH72050	Soybean	plastid	73.59	71.05
Solyc10g081650.1.1	Tomato	plastid	74.28	70.89
KRH32922	Soybean	plastid	72.23	69.62
TraesCS5D01G528500.1	Wheat	plastid	28.11	28.35

Protein Annotations

KEGG:00906+5.2.1.13	Gene3D:3.50.50.60	MapMan:9.1.6.1.7	InterPro:Amino_oxidase	InterPro:CRTISO	InterPro:FAD/NAD-bd_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016117	GO:GO:0016491	GO:GO:0046608	GO:GO:0055114	InterPro:IPR036188
PFAM:PF01593	PANTHER:PTHR10668	PANTHER:PTHR10668:SF104	SUPFAM:SSF51905	TIGRFAMs:TIGR02730	EnsemblPlantsGene:TraesCS1D01G074300
EnsemblPlants:TraesCS1D01G074300.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:55655782..55661156

Molecular Weight (calculated)

64010.4 Da

IEP (calculated)

8.113

GRAVY (calculated)

-0.047

Length

587 amino acids

Sequence
(BLAST)

001: MPLLLSPLTA RCLHRSPHLP APVAHRPSRP RPLGGEARGG GRGRVAVVSE RQAAAVEKSP GGEGSDGERY DAIVVGSGIG GLVAATQLAA KGARVLVLEK
101: YIIPGGSSGY YRRDGFTFDV GSSVMFGFSD KGNLNLITQA LEAVGCKMEV IPDPSTVHFH LPGALSVLVH REYNDFIEEL VSKFPHEKEG ILKFYGTCWK
201: IFNSLNSLEL KSLEEPLYLF GQFFKKPLEC LTLAYYLPQN AGDIARKFIK DQQLLSFIDA ECFIVSTVNA LKTPMINASM VLCDRHFGGI NYPVGGVGGI
301: AVSLANGLVE KGSAIRYKAN VTNVILENGK AVGVRLSNGK ELFARTVISN ATRWDTFGKL VKAEELPEEE KNFQKNYVKA PSFLSIHLGV KASVLPAGTD
401: CHHFVLEDDW SNLEKPYGSI FLSIPTVLDP SLAPEGHHIL HIFTTAGIED WEGLPRKDYE QKKELVANEI IRRLENKLFP GLQDSIVLKE VGSPKTHRRF
501: LARNDGTYGP MPRGKPKGLL AMPFNTTSID GLYCVGDSCF PGQGVIAVAF SGVMCAHRVA ADIDLEQRSP ILDTGLLGVL RWLRTLA

Best Arabidopsis Sequence Match ( AT1G06820.1 )
(BLAST)

001: MDLCFQNPVK CGDRLFSALN TSTYYKLGTS NLGFNGPVLE NRKKKKKLPR MVTVKSVSSS VVASTVQGTK RDGGESLYDA IVIGSGIGGL VAATQLAVKE
101: ARVLVLEKYL IPGGSSGFYE RDGYTFDVGS SVMFGFSDKG NLNLITQALK AVGRKMEVIP DPTTVHFHLP NNLSVRIHRE YDDFIAELTS KFPHEKEGIL
201: GFYGDCWKIF NSLNSLELKS LEEPIYLFGQ FFQKPLECLT LAYYLPQNAG AIARKYIKDP QLLSFIDAEC FIVSTVNALQ TPMINASMVL CDRHYGGINY
301: PVGGVGGIAK SLAEGLVDQG SEIQYKANVK SIILDHGKAV GVRLADGREF FAKTIISNAT RWDTFGKLLK GEKLPKEEEN FQKVYVKAPS FLSIHMGVKA
401: EVLPPDTDCH HFVLEDDWKN LEEPYGSIFL SIPTILDSSL APDGRHILHI FTTSSIEDWE GLPPKEYEAK KEDVAARIIQ RLEKKLFPGL SSSITFKEVG
501: TPRTHRRFLA RDKGTYGPMP RGTPKGLLGM PFNTTAIDGL YCVGDSCFPG QGVIAVAFSG VMCAHRVAAD IGLEKKSRVL DVGLLGLLGW LRTLA

Arabidopsis Description

CRTISOProlycopene isomerase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M9Y8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.