Factsheet for Os11t0572700-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2
plastid 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08717	Sorghum	plastid	86.35	86.2
HORVU1Hr1G015490.5	Barley	plastid	86.86	85.98
TraesCS1D01G074300.1	Wheat	plastid	85.84	85.69
TraesCS1B01G090300.1	Wheat	mitochondrion	86.01	85.14
Zm00001d052932_P001	Maize	plastid	85.15	85.01
Zm00001d007502_P001	Maize	plastid	84.64	84.79
TraesCS1A01G071700.1	Wheat	mitochondrion	85.15	84.72
GSMUA_Achr8P26670_001	Banana	cytosol	75.94	84.44
VIT_08s0032g00800.t01	Wine grape	cytosol	66.21	83.8
CDY09954	Canola	plastid	76.28	75.76
Bra031539.1-P	Field mustard	plastid	76.11	75.72
CDY06229	Canola	plastid	75.6	75.21
AT1G06820.1	Thale cress	cytosol	74.91	73.78
PGSC0003DMT400072543	Potato	cytosol	76.28	72.68
KRH72050	Soybean	plastid	74.74	72.04
Solyc10g081650.1.1	Tomato	plastid	75.43	71.87
KRH32922	Soybean	plastid	73.72	70.94
Os03t0841900-00	Rice	plasma membrane	28.5	25.89

Protein Annotations

KEGG:00906+5.2.1.13	Gene3D:3.50.50.60	MapMan:9.1.6.1.7	ProteinID:ABA94396.2	InterPro:Amino_oxidase	InterPro:CRTISO
ProteinID:EEE52308.1	InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009662
GO:GO:0009987	GO:GO:0016043	GO:GO:0016117	GO:GO:0016491	GO:GO:0016853	GO:GO:0046608
GO:GO:0055114	InterPro:IPR036188	EnsemblPlantsGene:Os11g0572700	EnsemblPlants:Os11t0572700-01	PFAM:PF01593	PANTHER:PTHR10668
PANTHER:PTHR10668:SF104	UniProt:Q2R2A6	SUPFAM:SSF51905	TIGRFAMs:TIGR02730	UniParc:UPI0000D89B3E	SEG:seg

Description

carotenoid isomeraseCarotenoid isomerase, Carotenoid biosynthesis, Root and coleoptile growth (Os11t0572700-01)

Coordinates

chr11:+:21485902..21490094

Molecular Weight (calculated)

63546.9 Da

IEP (calculated)

6.876

GRAVY (calculated)

0.018

Length

586 amino acids

Sequence
(BLAST)

001: MPLLLLAAAR PCAPLLAPSA AGAVVGRPST ARPLGRGTRR GAGAAAAAAV AAEKTVVKAE EEEEGGGEYD AIVVGSGIGG MVAATQLAAK GARVLVLEKY
101: VIPGGSSGYY RRDGFTFDVG SSVMFGFSDK GNLNLITQAL EAVGHKMEVI PDPSTVHFHL PGDLSVLVHR EYDDFVTELV NKFPHEKEGI LKFYGTCWKI
201: FNSLNSLELK SLEEPLYLFG QFFQKPLECL TLAYYLPQNA GDIARKFIKD QQLLSFIDAE CFIVSTVNAL QTPMINASMV LCDRHFGGIN YPVGGVGGIA
301: MSLADGLVDK GSEIRYKANV TNVILENGKA VGVRLSNGKE FFAKTVISNA TRWDTFGKLL KVEELPEEEK NFQKNYVKAP SFLSIHMGVK ASVLPADTDC
401: HHFVLEDDWA NLEKPYGSIF LSIPTVLDPS LAPEGHHILH IFTTAGIEDW EGLSRKDYEK KKELVATEII KRLEKKLFPG LQDSIVLKEV GSPKTHRRFL
501: ARNDGTYGPM PRGKPKGLLA MPFNTTSIDG LYCVGDSCFP GQGVIAVAFS GIMCAHRVAA DIGLEQRSPV LDAGLLGLLR WLRTLA

Best Arabidopsis Sequence Match ( AT1G06820.1 )
(BLAST)

001: MDLCFQNPVK CGDRLFSALN TSTYYKLGTS NLGFNGPVLE NRKKKKKLPR MVTVKSVSSS VVASTVQGTK RDGGESLYDA IVIGSGIGGL VAATQLAVKE
101: ARVLVLEKYL IPGGSSGFYE RDGYTFDVGS SVMFGFSDKG NLNLITQALK AVGRKMEVIP DPTTVHFHLP NNLSVRIHRE YDDFIAELTS KFPHEKEGIL
201: GFYGDCWKIF NSLNSLELKS LEEPIYLFGQ FFQKPLECLT LAYYLPQNAG AIARKYIKDP QLLSFIDAEC FIVSTVNALQ TPMINASMVL CDRHYGGINY
301: PVGGVGGIAK SLAEGLVDQG SEIQYKANVK SIILDHGKAV GVRLADGREF FAKTIISNAT RWDTFGKLLK GEKLPKEEEN FQKVYVKAPS FLSIHMGVKA
401: EVLPPDTDCH HFVLEDDWKN LEEPYGSIFL SIPTILDSSL APDGRHILHI FTTSSIEDWE GLPPKEYEAK KEDVAARIIQ RLEKKLFPGL SSSITFKEVG
501: TPRTHRRFLA RDKGTYGPMP RGTPKGLLGM PFNTTAIDGL YCVGDSCFPG QGVIAVAFSG VMCAHRVAAD IGLEKKSRVL DVGLLGLLGW LRTLA

Arabidopsis Description

CRTISOProlycopene isomerase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M9Y8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.