Factsheet for GSMUA_Achr8P26670_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0032g00800.t01	Wine grape	cytosol	76.09	86.61
Os11t0572700-01	Rice	plastid	84.44	75.94
TraesCS1D01G074300.1	Wheat	plastid	83.11	74.62
Zm00001d052932_P001	Maize	plastid	82.73	74.28
Bra031539.1-P	Field mustard	plastid	82.92	74.19
Zm00001d007502_P001	Maize	plastid	82.35	74.19
TraesCS1B01G090300.1	Wheat	mitochondrion	83.3	74.16
CDY09954	Canola	plastid	82.92	74.07
TraesCS1A01G071700.1	Wheat	mitochondrion	82.73	74.02
HORVU1Hr1G015490.5	Barley	plastid	83.11	73.99
EES08717	Sorghum	plastid	82.35	73.94
CDY06229	Canola	plastid	81.97	73.34
AT1G06820.1	Thale cress	cytosol	82.54	73.11
PGSC0003DMT400072543	Potato	cytosol	83.68	71.71
Solyc10g081650.1.1	Tomato	plastid	83.3	71.38
KRH72050	Soybean	plastid	81.78	70.89
KRH32922	Soybean	plastid	81.78	70.77
GSMUA_Achr8P08430_001	Banana	peroxisome	29.79	29.62

Protein Annotations

KEGG:00906+5.2.1.13	Gene3D:3.50.50.60	MapMan:9.1.6.1.7	InterPro:Amino_oxidase	InterPro:CRTISO	InterPro:FAD/NAD-bd_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009662	GO:GO:0009987	GO:GO:0016043	GO:GO:0016117	GO:GO:0016491	GO:GO:0046608
GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr8G26670_001	EnsemblPlants:GSMUA_Achr8P26670_001	EnsemblPlants:GSMUA_Achr8T26670_001	InterPro:IPR036188	UniProt:M0TTX0
PFAM:PF01593	PANTHER:PTHR10668	PANTHER:PTHR10668:SF104	SUPFAM:SSF51905	TIGRFAMs:TIGR02730	UniParc:UPI0002955742
SEG:seg	:	:	:	:	:

Description

Carotenoid isomerase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr8G26670_001]

Coordinates

chr8:+:30130087..30136081

Molecular Weight (calculated)

57891.2 Da

IEP (calculated)

7.049

GRAVY (calculated)

0.023

Length

527 amino acids

Sequence
(BLAST)

001: MSGGGMEREY DAIVIGSGIG GLVAATQLAA KGAKVLVLEK YVIPGGSSGY YERDGFTFDV GSSVMFGFSD KGNLNLITQA LEAVGHKMQV IPDPTTVHFH
101: LPGELSVRVH RGYNEFIAEL INKFPHEKEG IHQFYNECWK IFNALNSLEL KSLEEPLYLF GQFFKKPLEC LTLAYYLPQN AGDVARKFIK DPQLLSFIDA
201: ECFIVSTVNA LQTPMINASM VLCDRHFGGI NYPIGGVGGI AKALANGLVD KGSNILYKSN VTSILLNNGK AVGVRLSDGR EFFATTVISN ATRWDTFGKL
301: VKMDDLPEEE KNFQRIYVKA PSFLSIHMGV KATVLPPDTD CHHFILEDDW ANLEKPYGSI FLSIPTVLDS SLAPEGHHIL HIFTTSCIED WKGLGSKDYE
401: KKKELVADKI ISRLETELFP GLKSSIVLKE VGTPKTHRRF LARDNGTYGP MPRKVPKGLL GMPFNTTAID GLYCVGDSCF PGQGVIAVAF SGIMCAHRVA
501: ADIGLEKRSP ILDAALLRFL GWLRTIA

Best Arabidopsis Sequence Match ( AT1G06820.1 )
(BLAST)

001: MDLCFQNPVK CGDRLFSALN TSTYYKLGTS NLGFNGPVLE NRKKKKKLPR MVTVKSVSSS VVASTVQGTK RDGGESLYDA IVIGSGIGGL VAATQLAVKE
101: ARVLVLEKYL IPGGSSGFYE RDGYTFDVGS SVMFGFSDKG NLNLITQALK AVGRKMEVIP DPTTVHFHLP NNLSVRIHRE YDDFIAELTS KFPHEKEGIL
201: GFYGDCWKIF NSLNSLELKS LEEPIYLFGQ FFQKPLECLT LAYYLPQNAG AIARKYIKDP QLLSFIDAEC FIVSTVNALQ TPMINASMVL CDRHYGGINY
301: PVGGVGGIAK SLAEGLVDQG SEIQYKANVK SIILDHGKAV GVRLADGREF FAKTIISNAT RWDTFGKLLK GEKLPKEEEN FQKVYVKAPS FLSIHMGVKA
401: EVLPPDTDCH HFVLEDDWKN LEEPYGSIFL SIPTILDSSL APDGRHILHI FTTSSIEDWE GLPPKEYEAK KEDVAARIIQ RLEKKLFPGL SSSITFKEVG
501: TPRTHRRFLA RDKGTYGPMP RGTPKGLLGM PFNTTAIDGL YCVGDSCFPG QGVIAVAFSG VMCAHRVAAD IGLEKKSRVL DVGLLGLLGW LRTLA

Arabidopsis Description

CRTISOProlycopene isomerase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M9Y8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.