CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17860.1	KRH11076	AT4G19030.1	21798944
AT1G17860.1	KRH21197	AT4G19030.1	21798944
AT1G17860.1	KRH42923	AT4G19030.1	21798944
AT1G17860.1	KRH42926	AT4G19030.1	21798944
AT1G17860.1	KRH45251	AT4G19030.1	21798944
AT1G17860.1	KRH59035	AT4G19030.1	21798944
AT1G17860.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38870	Soybean	endoplasmic reticulum	53.27	54.55
KRH38863	Soybean	endoplasmic reticulum	52.34	52.09
KRH38862	Soybean	endoplasmic reticulum	50.0	50.71
KRH38869	Soybean	golgi, plasma membrane, vacuole	49.53	49.77
KRH38860	Soybean	extracellular	46.26	49.75
KRH38861	Soybean	extracellular	49.53	49.3
KRH38855	Soybean	extracellular	45.79	49.25
KRH38856	Soybean	extracellular	42.99	48.94
KRH38857	Soybean	extracellular	45.33	48.74
KRH09376	Soybean	extracellular	44.86	48.0
KRH75900	Soybean	cytosol	20.09	47.78
KRH38858	Soybean	extracellular	44.39	47.74
KRH38868	Soybean	endoplasmic reticulum	45.79	45.37
Bra025942.1-P	Field mustard	extracellular	39.25	43.75
CDY26209	Canola	extracellular	38.78	43.23
CDY19181	Canola	extracellular	38.78	43.23
AT1G17860.1	Thale cress	extracellular	39.25	42.86
KRH09377	Soybean	endoplasmic reticulum	40.19	42.79
Bra016580.1-P	Field mustard	extracellular	38.78	42.56
CDX96746	Canola	extracellular	38.78	42.56
CDX83886	Canola	extracellular	38.32	42.05
KRH09380	Soybean	nucleus	39.72	41.67
KRH38871	Soybean	mitochondrion	37.85	39.9
KRH75892	Soybean	cytosol, extracellular, vacuole	27.57	39.07
GSMUA_Achr1P01860_001	Banana	extracellular	35.51	38.0
GSMUA_Achr5P19420_001	Banana	extracellular	39.25	37.84
Solyc03g098670.1.1	Tomato	extracellular	33.64	35.82
PGSC0003DMT400026293	Potato	vacuole	33.18	34.13
HORVU2Hr1G090750.1	Barley	extracellular	17.29	30.33
TraesCS2A01G375400.1	Wheat	extracellular, vacuole	27.1	28.57
TraesCS2D01G371800.1	Wheat	extracellular	26.64	28.08
Os04t0526600-01	Rice	extracellular	26.17	28.0
TraesCS2B01G392500.1	Wheat	golgi	25.7	27.23
KRH27434	Soybean	extracellular	24.77	26.77
KRH44856	Soybean	extracellular	25.23	26.6
KRH44855	Soybean	extracellular	25.7	26.44
Zm00001d002960_P001	Maize	extracellular	18.69	26.32
KRH13021	Soybean	extracellular	25.23	26.21
Solyc03g098730.1.1	Tomato	nucleus	29.91	26.02
KRH27433	Soybean	nucleus	23.36	25.51
PGSC0003DMT400026262	Potato	vacuole	28.97	25.31
KXG23922	Sorghum	extracellular	24.77	24.42
EES12537	Sorghum	vacuole	24.3	22.61
VIT_00s0207g00030.t01	Wine grape	extracellular, nucleus	0.0	0.0

Protein Annotations

EntrezGene:100306134	Gene3D:2.80.10.50	MapMan:35.1	EMBL:ACUP02010276	EMBL:BT090093	UniProt:C6SY46
EnsemblPlantsGene:GLYMA_16G212400	GO:GO:0003674	GO:GO:0004866	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010951	GO:GO:0019538	GO:GO:0030234	MEROPS:I03.030	EnsemblPlants:KRH09379	ProteinID:KRH09379
ProteinID:KRH09379.1	InterPro:Kunitz_inhibitor_STI-like_sf	PFAM:PF00197	PRINTS:PR00291	ScanProsite:PS00283	PANTHER:PTHR33107
PANTHER:PTHR33107:SF9	InterPro:Prot_inh_Kunz-lg	SMART:SM00452	SUPFAM:SSF50386	SignalP:SignalP-noTM	UniParc:UPI0001B1567A
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:37071149..37072040

Molecular Weight (calculated)

23594.2 Da

IEP (calculated)

8.189

GRAVY (calculated)

-0.060

Length

214 amino acids

Sequence
(BLAST)

001: MKFMYLAFLL LFVFSSQFLL GGADASPRQV IDTEGKKVRA GVDYYIRPVP TTPCDGRGPC VVGSGYVLIA RSSNHTCPLS VAVVEGFRGL AVTFKLVNPK
101: KGVIRVSTDL NIKTSLTNTS CSESTVWKLD AFDDSTGQWF VTTGGVLGNP GKDTIDNWFK IEEYDDDYKL VFCPTVCNFC KPLCRNVGVF RDSNGNQRVA
201: LTDEPYKVRF QPSA

Best Arabidopsis Sequence Match ( AT1G17860.1 )
(BLAST)

001: MSSLLYIFLL LAVFISHRGV TTEAAVEPVK DINGKSLLTG VNYYILPVIR GRGGGLTMSN LKTETCPTSV IQDQFEVSQG LPVKFSPYDK SRTIPVSTDV
101: NIKFSPTSIW ELANFDETTK QWFISTCGVE GNPGQKTVDN WFKIDKFEKD YKIRFCPTVC NFCKVICRDV GVFVQDGKRR LALSDVPLKV MFKRAY

Arabidopsis Description

KTI2Kunitz trypsin inhibitor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMU2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.