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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 8
  • endoplasmic reticulum 5
  • vacuole 7
  • plasma membrane 5
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:extracellular
iPSORT:secretory
MultiLoc:vacuole
Plant-mPloc:vacuole
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:extracellular
 nucleus: 21132161
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH11076
KRH21197
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G17860.1 KRH11076 AT4G19030.1 21798944
AT1G17860.1 KRH21197 AT4G19030.1 21798944
AT1G17860.1 KRH42923 AT4G19030.1 21798944
AT1G17860.1 KRH42926 AT4G19030.1 21798944
AT1G17860.1 KRH45251 AT4G19030.1 21798944
AT1G17860.1 KRH59035 AT4G19030.1 21798944
AT1G17860.1 KRH59036 AT4G19030.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH38871 Soybean mitochondrion 85.29 85.71
Bra016580.1-P Field mustard extracellular 46.08 48.21
CDX83886 Canola extracellular 46.08 48.21
CDX96746 Canola extracellular 46.08 48.21
AT1G17860.1 Thale cress extracellular 43.63 45.41
Bra025942.1-P Field mustard extracellular 41.67 44.27
CDY19181 Canola extracellular 41.18 43.75
CDY26209 Canola extracellular 41.18 43.75
KRH38870 Soybean endoplasmic reticulum 43.63 42.58
KRH38857 Soybean extracellular 41.18 42.21
KRH38860 Soybean extracellular 40.69 41.71
KRH38855 Soybean extracellular 40.69 41.71
KRH38858 Soybean extracellular 40.2 41.21
KRH09376 Soybean extracellular 39.22 40.0
KRH38856 Soybean extracellular 36.76 39.89
KRH09379 Soybean nucleus 41.67 39.72
KRH38863 Soybean endoplasmic reticulum 41.18 39.07
KRH38869 Soybean golgi, plasma membrane, vacuole 40.69 38.97
GSMUA_Achr5P19420_001 Banana extracellular 41.18 37.84
KRH38862 Soybean endoplasmic reticulum 38.73 37.44
KRH09377 Soybean endoplasmic reticulum 36.76 37.31
KRH38861 Soybean extracellular 38.73 36.74
GSMUA_Achr1P01860_001 Banana extracellular 35.78 36.5
Solyc03g098670.1.1 Tomato extracellular 35.78 36.32
KRH38868 Soybean endoplasmic reticulum 38.24 36.11
KRH75900 Soybean cytosol 15.2 34.44
PGSC0003DMT400026293 Potato vacuole 33.33 32.69
Os04t0526600-01 Rice extracellular 31.37 32.0
TraesCS2B01G392500.1 Wheat golgi 30.39 30.69
TraesCS2D01G371800.1 Wheat extracellular 28.92 29.06
TraesCS2A01G375400.1 Wheat extracellular, vacuole 28.92 29.06
Zm00001d002960_P001 Maize extracellular 21.57 28.95
KRH75892 Soybean cytosol, extracellular, vacuole 21.08 28.48
HORVU2Hr1G090750.1 Barley extracellular 16.67 27.87
KRH27433 Soybean nucleus 25.98 27.04
KRH44855 Soybean extracellular 27.45 26.92
EES12537 Sorghum vacuole 29.9 26.52
KXG23922 Sorghum extracellular 27.94 26.27
KRH44856 Soybean extracellular 25.49 25.62
Solyc03g098730.1.1 Tomato nucleus 30.88 25.61
KRH13021 Soybean extracellular 25.0 24.76
PGSC0003DMT400026262 Potato vacuole 29.41 24.49
KRH27434 Soybean extracellular 23.53 24.24
VIT_00s0207g00030.t01 Wine grape extracellular, nucleus 0.0 0.0
Protein Annotations
EntrezGene:100527288Gene3D:2.80.10.50MapMan:35.1EMBL:ACUP02010276EMBL:BT092119UniProt:C6T3V8
EnsemblPlantsGene:GLYMA_16G212500GO:GO:0003674GO:GO:0004866GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0010951GO:GO:0019538GO:GO:0030234MEROPS:I03.030EnsemblPlants:KRH09380ProteinID:KRH09380
ProteinID:KRH09380.1InterPro:Kunitz_inhibitor_STI-like_sfPFAM:PF00197PRINTS:PR00291PANTHER:PTHR33107PANTHER:PTHR33107:SF5
InterPro:Prot_inh_Kunz-lgSMART:SM00452SUPFAM:SSF50386SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0001B1562E
Description
hypothetical protein
Coordinates
chr16:+:37081156..37082204
Molecular Weight (calculated)
22113.0 Da
IEP (calculated)
9.855
GRAVY (calculated)
0.107
Length
204 amino acids
Sequence
(BLAST)
001: MKKVSPLAFS ILFLAFTIEP FIGIAAAAPE AVLDTSGQKL RTGVKYYILP VFRGKGGGLT VSSSGNNTCP LFVVQEKLEV SKGTPVTFTP YNAKSGVILT
101: STDLNIKSYG KTTTCDKPPV WKLLKVLTGV WFLSTGGVEG NPGVNTVVNW FKIEKAEKDY VLSFCPSFAQ TLCRELGLYV GDDGNKHLSL SDKVPSFKVM
201: FKRA
Best Arabidopsis Sequence Match ( AT1G17860.1 )
(BLAST)
001: MSSLLYIFLL LAVFISHRGV TTEAAVEPVK DINGKSLLTG VNYYILPVIR GRGGGLTMSN LKTETCPTSV IQDQFEVSQG LPVKFSPYDK SRTIPVSTDV
101: NIKFSPTSIW ELANFDETTK QWFISTCGVE GNPGQKTVDN WFKIDKFEKD YKIRFCPTVC NFCKVICRDV GVFVQDGKRR LALSDVPLKV MFKRAY
Arabidopsis Description
KTI2Kunitz trypsin inhibitor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMU2]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.