CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 4
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00697	Soybean	cytosol	98.79	98.79
GSMUA_Achr3P27270_001	Banana	cytosol	32.39	88.89
PGSC0003DMT400014862	Potato	cytosol	79.35	88.29
VIT_15s0046g03520.t01	Wine grape	cytosol	88.66	87.95
Solyc08g008670.2.1	Tomato	cytosol, extracellular	87.85	86.11
Solyc05g048760.2.1	Tomato	cytosol	87.85	86.11
PGSC0003DMT400055722	Potato	cytosol	87.85	86.11
GSMUA_Achr9P23680_001	Banana	cytosol	30.77	84.44
Zm00001d001789_P001	Maize	cytosol	85.02	84.34
EES11670	Sorghum	cytosol	85.02	84.34
TraesCS2B01G599300.1	Wheat	golgi	83.81	83.13
PGSC0003DMT400035624	Potato	cytosol	85.43	83.07
TraesCS2D01G593400.1	Wheat	cytosol	84.21	82.54
Solyc05g046340.1.1	Tomato	extracellular	84.21	82.54
TraesCS4B01G239500.1	Wheat	cytosol	82.59	82.26
AT2G45790.1	Thale cress	cytosol	81.78	82.11
Bra004938.1-P	Field mustard	cytosol	81.78	82.11
CDX74766	Canola	cytosol	81.78	82.11
CDX83390	Canola	cytosol	81.78	82.11
CDY68272	Canola	cytosol	81.78	82.11
CDY18900	Canola	cytosol	81.78	82.11
TraesCS4D01G239500.1	Wheat	cytosol	83.4	82.07
Bra000403.1-P	Field mustard	cytosol	81.38	81.71
CDX95665	Canola	cytosol	81.38	81.71
TraesCSU01G037500.1	Wheat	cytosol	83.0	81.67
CDY27359	Canola	cytosol	80.57	80.89
TraesCS4A01G062700.1	Wheat	cytosol	81.38	80.72
CDY37065	Canola	cytosol	80.16	80.49
GSMUA_Achr3P27260_001	Banana	cytosol	52.23	80.12
Bra039314.1-P	Field mustard	cytosol	79.76	79.76
CDX95664	Canola	cytosol	73.68	79.13
TraesCS7A01G089800.1	Wheat	cytosol	78.54	77.91
TraesCS7D01G085300.1	Wheat	cytosol	76.92	76.31
TraesCS4A01G389300.1	Wheat	cytosol	76.52	75.9
HORVU1Hr1G024000.1	Barley	cytosol	31.17	75.49
GSMUA_Achr9P23690_001	Banana	cytosol	48.58	74.07
HORVU4Hr1G066430.10	Barley	cytosol, plasma membrane	73.28	69.62
Solyc08g076560.1.1	Tomato	cytosol	13.36	67.35
HORVU5Hr1G098510.2	Barley	cytosol	37.25	67.15
OQU81094	Sorghum	cytosol	72.06	60.96
HORVU2Hr1G122950.1	Barley	cytosol	83.81	58.47
Solyc08g076550.1.1	Tomato	cytosol	31.17	32.35

Protein Annotations

KEGG:00051+5.4.2.8	KEGG:00520+5.4.2.8	MapMan:10.3.1.2	EntrezGene:100819768	Gene3D:3.30.1240.20	Gene3D:3.40.50.1000
EMBL:ACUP02006038	EMBL:BT093720	UniProt:C6T8C4	EnsemblPlantsGene:GLYMA_09G262400	GO:GO:0003674	GO:GO:0003824
GO:GO:0004615	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005975	GO:GO:0006013	GO:GO:0006139	GO:GO:0006464	GO:GO:0006487	GO:GO:0006810
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009298	GO:GO:0009987	GO:GO:0016853
GO:GO:0019538	GO:GO:0045047	InterPro:HAD-SF_hydro_IIB	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214
EnsemblPlants:KRH40498	ProteinID:KRH40498	ProteinID:KRH40498.1	PFAM:PF03332	InterPro:PMM	PANTHER:PTHR10466
PANTHER:PTHR10466:SF0	MetaCyc:PWY-5659	MetaCyc:PWY-7456	MetaCyc:PWY-7586	MetaCyc:PWY-882	SUPFAM:SSF56784
TIGRFAMs:TIGR01484	UniParc:UPI0001B15FD0	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:48006907..48014442

Molecular Weight (calculated)

28066.6 Da

IEP (calculated)

6.170

GRAVY (calculated)

-0.321

Length

247 amino acids

Sequence
(BLAST)

001: MAARRPGLIA LFDVDGTLTA PRKVVTPEML TFMQELRKVV TVGVVGGSDL IKISEQLGST VTNEYDYVFS ENGLVAHKEG KLIGTQSLKS FLGEEKLKEF
101: INFTLHYIAD LDIPIKRGTF MEFRSGMLNV SPIGRNCSQE ERDEFEKYDK VHNIRPKMVS VLREKFAHLN LTFSIGGQIS FDVFPQGWDK TYCLRYLDGF
201: NEIHFFGDKT YKGGNDHEIY ESERTIGHTV TSPDDTVKQC KSLFLEN

Best Arabidopsis Sequence Match ( AT2G45790.1 )
(BLAST)

001: MAAKIPGVIA LFDVDGTLTA PRKEATPELL DFIRELRKVV TIGVVGGSDL SKISEQLGKT VTNDYDYCFS ENGLVAHKDG KSIGIQSLKL HLGDDKLKEL
101: INFTLHYIAD LDIPIKRGTF IEFRNGMLNV SPIGRNCSQE ERDEFERYDK VQNIRPKMVA ELRERFAHLN LTFSIGGQIS FDVFPKGWDK TYCLQYLEDF
201: SEIHFFGDKT YEGGNDYEIY ESPKTIGHSV TSPDDTVAKC KALFMS

Arabidopsis Description

PMMPhosphomannomutase [Source:UniProtKB/Swiss-Prot;Acc:O80840]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.