CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10519	Soybean	endoplasmic reticulum	96.0	96.0
KRH10518	Soybean	extracellular	84.62	85.4
PGSC0003DMT400032789	Potato	extracellular	71.69	70.39
Solyc01g105070.2.1	Tomato	extracellular	71.38	69.88
VIT_12s0055g01010.t01	Wine grape	plastid	66.77	69.77
VIT_12s0055g01030.t01	Wine grape	extracellular	67.69	67.9
VIT_12s0055g01020.t01	Wine grape	plastid	64.31	67.2
VIT_12s0055g01000.t01	Wine grape	plastid	64.31	67.2
KRH43911	Soybean	extracellular	65.85	66.67
VIT_12s0055g00980.t01	Wine grape	extracellular	55.08	60.07
KRH54959	Soybean	extracellular	59.69	60.06
KRH20268	Soybean	extracellular, golgi, mitochondrion, plasma membrane	60.92	57.06
KRH43937	Soybean	extracellular	49.54	49.69
KRH10491	Soybean	extracellular	49.23	49.54
KRH22535	Soybean	extracellular	46.15	46.3
KRH26822	Soybean	endoplasmic reticulum	46.15	46.01
KRH26821	Soybean	endoplasmic reticulum	46.15	46.01
KRH22534	Soybean	extracellular	45.85	45.71
KRH56092	Soybean	extracellular, mitochondrion	45.23	45.37
KRH31947	Soybean	extracellular	44.62	45.03
KRH71514	Soybean	extracellular	44.62	45.03
KRH56093	Soybean	extracellular	44.62	44.62
KRH68093	Soybean	endoplasmic reticulum	44.31	44.44
KRH25412	Soybean	extracellular	44.0	44.14
KRH68092	Soybean	endoplasmic reticulum	43.69	44.1
KRH25410	Soybean	cytosol	26.77	35.37
KRG96357	Soybean	extracellular	20.0	31.86

Protein Annotations

KEGG:00940+1.11.1.7	Gene3D:1.10.420.10	Gene3D:1.10.520.10	EntrezGene:100789782	MapMan:35.1	EMBL:ACUP02004903
EMBL:BT095953	UniProt:C6TED1	EnsemblPlantsGene:GLYMA_08G179700	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601
GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0006950
GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009505	GO:GO:0009506
GO:GO:0009664	GO:GO:0009987	GO:GO:0016043	GO:GO:0016491	GO:GO:0020037	GO:GO:0030312
GO:GO:0042744	GO:GO:0046872	GO:GO:0055114	GO:GO:0098869	InterPro:Haem_peroxidase	InterPro:Haem_peroxidase_pln/fun/bac
InterPro:IPR002016	EnsemblPlants:KRH43912	ProteinID:KRH43912	ProteinID:KRH43912.1	PFAM:PF00141	PRINTS:PR00458
PRINTS:PR00461	ScanProsite:PS00435	ScanProsite:PS00436	PFscan:PS50873	PANTHER:PTHR31235	PANTHER:PTHR31235:SF27
MetaCyc:PWY-5461	MetaCyc:PWY-5466	MetaCyc:PWY-5469	MetaCyc:PWY-6824	MetaCyc:PWY-7214	MetaCyc:PWY-7445
InterPro:Peroxidase_pln	InterPro:Peroxidases_AS	InterPro:Peroxidases_heam-ligand_BS	SUPFAM:SSF48113	InterPro:Secretory_peroxidase	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0001B16B4B	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:14406626..14408844

Molecular Weight (calculated)

34704.3 Da

IEP (calculated)

7.061

GRAVY (calculated)

0.003

Length

325 amino acids

Sequence
(BLAST)

001: MEARSLYSLV FLVLALAIVN TVHGQGTRVG FYSSACPLAE SIVKSTVTTH VNSDSTLAAG LLRMHFHDCF VQGCDASVLI AGSGTERTAF ANLGLRGFEV
101: IDDAKTQLEA TCPGVVSCAD ILALAARDSV VHSGGLSYQV PTGRRDGRIS QASDVSNLPA PFDSVEVQTQ KFTAKGLNTQ DLVTLVGAHT IGTTACQFFS
201: NRLYNFTANG PDPSIDPSFL PQLQSLCPQN GDGSKRVALD TGSQTKFDLS YYSNLRNSRG ILQSDQALWS DASTKTTVQR YLGLIKGLLG LTFNVEFGKS
301: MIKMGNIELK TGTDGEIRKI CSAIN

Best Arabidopsis Sequence Match ( AT2G41480.1 )
(BLAST)

001: MGVYLGKYCY IMIIMLVLVL GKEVRSQLLK NGYYSTSCPK AESIVRSTVE SHFDSDPTIS PGLLRLHFHD CFVQGCDGSV LIKGKSAEQA ALPNLGLRGL
101: EVIDDAKARL EAVCPGVVSC ADILALAARD SVDLSDGPSW RVPTGRKDGR ISLATEASNL PSPLDSVAVQ KQKFQDKGLD THDLVTLLGA HTIGQTDCLF
201: FRYRLYNFTV TGNSDPTISP SFLTQLKTLC PPNGDGSKRV ALDIGSPSKF DESFFKNLRD GNAILESDQR LWSDAETNAV VKKYASRLRG LLGFRFDYEF
301: GKAMIKMSSI DVKTDVDGEV RKVCSKVN

Arabidopsis Description

PER25Peroxidase 25 [Source:UniProtKB/Swiss-Prot;Acc:O80822]
SUBAcon: [plasma membrane,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.