CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05260.1	KRH42483	AT2G01950.1	19000166
AT1G05260.1	KRH58580	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22534	Soybean	extracellular	95.71	95.71
KRH26821	Soybean	endoplasmic reticulum	94.17	94.17
KRH22535	Soybean	extracellular	93.25	93.83
KRH56093	Soybean	extracellular	72.39	72.62
KRH56092	Soybean	extracellular, mitochondrion	71.17	71.6
KRH25412	Soybean	extracellular	70.86	71.3
AT4G11290.1	Thale cress	extracellular	68.1	68.1
CDY10037	Canola	extracellular	67.79	67.79
Solyc07g052540.2.1	Tomato	extracellular	68.4	67.78
PGSC0003DMT400038889	Potato	extracellular	67.79	67.58
CDY46845	Canola	extracellular	67.48	67.48
Solyc07g052530.2.1	Tomato	extracellular	68.1	67.48
Bra032474.1-P	Field mustard	extracellular	59.2	67.25
AT1G05260.1	Thale cress	extracellular	67.18	67.18
Bra015404.1-P	Field mustard	extracellular	67.18	67.18
CDY59800	Canola	extracellular	67.18	67.18
PGSC0003DMT400065517	Potato	extracellular	67.79	67.17
PGSC0003DMT400013504	Potato	extracellular	67.18	66.97
Solyc05g046020.2.1	Tomato	extracellular	67.18	66.97
Solyc05g046030.2.1	Tomato	extracellular	67.18	66.97
PGSC0003DMT400065516	Potato	extracellular	67.48	66.87
CDY13252	Canola	extracellular	66.56	66.56
Solyc05g046010.2.1	Tomato	extracellular	66.56	66.36
PGSC0003DMT400013520	Potato	extracellular	66.56	66.36
Solyc07g052550.1.1	Tomato	extracellular	66.87	66.26
CDY38641	Canola	extracellular	66.26	66.26
CDX86795	Canola	extracellular	66.26	66.26
Bra035235.1-P	Field mustard	extracellular	66.26	66.26
Bra031309.1-P	Field mustard	extracellular	66.26	66.26
Solyc07g047740.2.1	Tomato	extracellular	66.56	65.56
Solyc07g052510.2.1	Tomato	extracellular	65.95	65.55
PGSC0003DMT400001848	Potato	extracellular	66.26	65.26
Solyc07g049240.2.1	Tomato	extracellular	66.26	65.26
CDY49518	Canola	extracellular	65.03	65.03
PGSC0003DMT400065518	Potato	extracellular	65.03	64.63
CDY19299	Canola	vacuole	65.03	64.44
GSMUA_Achr9P30170_001	Banana	extracellular	58.28	64.19
CDY55649	Canola	vacuole	64.72	64.13
Bra023862.1-P	Field mustard	vacuole	64.42	63.83
AT3G21770.1	Thale cress	extracellular	64.11	63.53
GSMUA_Achr2P03020_001	Banana	extracellular	57.06	61.18
EER88826	Sorghum	extracellular	61.35	60.42
KRH25410	Soybean	cytosol	44.79	59.35
Solyc04g056420.1.1	Tomato	extracellular	49.39	58.97
CDY33143	Canola	extracellular	65.64	58.63
TraesCS7D01G442300.1	Wheat	extracellular	58.59	57.53
TraesCS7A01G453000.1	Wheat	extracellular	58.28	57.4
TraesCS7B01G353200.1	Wheat	extracellular	58.28	57.4
HORVU7Hr1G102480.7	Barley	extracellular	59.2	57.1
Os06t0681600-01	Rice	extracellular	57.98	56.08
TraesCS7D01G442200.1	Wheat	extracellular	56.44	55.42
KRH31947	Soybean	extracellular	54.6	55.28
KRH68093	Soybean	endoplasmic reticulum	54.6	54.94
TraesCS7A01G452900.1	Wheat	extracellular	55.83	54.82
KRH71514	Soybean	extracellular	53.99	54.66
KRH68092	Soybean	endoplasmic reticulum	53.99	54.66
CDY10042	Canola	extracellular	26.99	54.32
Zm00001d014467_P002	Maize	vacuole	59.51	53.74
TraesCS6A01G136500.1	Wheat	extracellular	53.37	53.21
TraesCS6B01G164400.2	Wheat	extracellular	53.68	51.02
TraesCS6D01G125500.1	Wheat	extracellular	53.37	50.58
TraesCS7B01G353100.1	Wheat	extracellular	56.44	50.14
HORVU6Hr1G026230.5	Barley	extracellular	52.76	50.0
Os02t0161800-01	Rice	extracellular, mitochondrion	53.07	49.71
EES06321	Sorghum	extracellular, golgi, plastid	53.37	49.43
KRH43912	Soybean	endoplasmic reticulum	46.01	46.15
KRH10519	Soybean	endoplasmic reticulum	45.71	45.85
KRH10518	Soybean	extracellular	44.79	45.34
KRG96357	Soybean	extracellular	28.22	45.1
Zm00001d053839_P001	Maize	extracellular	29.75	43.69
KRH43911	Soybean	extracellular	42.64	43.3
KRH54959	Soybean	extracellular	42.33	42.72
KRH10491	Soybean	extracellular	42.02	42.41
KRH43937	Soybean	extracellular	41.41	41.67
KRH20268	Soybean	extracellular, golgi, mitochondrion, plasma membrane	42.33	39.77
PGSC0003DMT400001851	Potato	extracellular	65.03	35.81

Protein Annotations

KEGG:00940+1.11.1.7	Gene3D:1.10.420.10	Gene3D:1.10.520.10	EntrezGene:100803114	MapMan:35.1	EMBL:ACUP02007749
EnsemblPlantsGene:GLYMA_12G195600	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009505	GO:GO:0009506	GO:GO:0009664	GO:GO:0009987
GO:GO:0016043	GO:GO:0016491	GO:GO:0020037	GO:GO:0030312	GO:GO:0042744	GO:GO:0046872
GO:GO:0055114	GO:GO:0098869	InterPro:Haem_peroxidase	InterPro:Haem_peroxidase_pln/fun/bac	UniProt:I1LU76	InterPro:IPR002016
EnsemblPlants:KRH26822	ProteinID:KRH26822	ProteinID:KRH26822.1	PFAM:PF00141	PRINTS:PR00458	PRINTS:PR00461
ScanProsite:PS00435	ScanProsite:PS00436	PFscan:PS50873	PANTHER:PTHR31235	PANTHER:PTHR31235:SF39	MetaCyc:PWY-5461
MetaCyc:PWY-5466	MetaCyc:PWY-5469	MetaCyc:PWY-6824	MetaCyc:PWY-7214	MetaCyc:PWY-7445	InterPro:Peroxidase_pln
InterPro:Peroxidases_AS	InterPro:Peroxidases_heam-ligand_BS	SUPFAM:SSF48113	InterPro:Secretory_peroxidase	SignalP:SignalP-noTM	UniParc:UPI000233C2CD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:35698413..35700711

Molecular Weight (calculated)

35803.1 Da

IEP (calculated)

8.331

GRAVY (calculated)

-0.069

Length

326 amino acids

Sequence
(BLAST)

001: MKMGSNFRFL SLCLLALIAS SHAQLQLGFY AKSCPKAEQI ILKFVHEHIH NAPSLAAALI RMHFHDCFVR GCDGSVLLNS TTNQAEKNAP PNLTVRGFDF
101: IDRIKSLVEA ECPGVVSCAD ILTLASRDSI VATGGPYWKV PTGRRDGVIS NLVEARNNIP APFDNITTLQ TLFANQGLDL KDLVLLSGAH TIGIAHCSSL
201: SNRLFNFTGK GDQDPSLDSE YAANLKTFKC KDLNKLNTTK IEMDPGSRKT FDLSYYSHVI KRRGLFESDA ALLTNSVTKA QIIELLEGSV EKFFAEFATS
301: IEKMGRIKVK TGTEGEIRKH CAFVNS

Best Arabidopsis Sequence Match ( AT4G11290.1 )
(BLAST)

001: MTRFGLALLM ILVIQGLVTF SEAQLKMGFY DQTCPYAEKI VQDVVNQHIN NAPSLAAGLI RMHFHDCFVR GCDGSILINA TSSNQQVEKL APPNLTVRGF
101: DFIDKVKSAL ESKCPGIVSC ADIITLATRD SIVAIGGPTW NVPTGRRDGR ISNFAEAMNN IPPPFGNFTT LITLFGNQGL DVKDLVLLSG AHTIGVSHCS
201: SFSNRLFNFT GVGDQDPSLD SEYADNLKSR RCLSIADNTT KVEMDPGSRN TFDLSYYRLV LKRRGLFESD AALTMNPAAL AQVKRFAGGS EQEFFAEFSN
301: SMEKMGRIGV KTGSDGEIRR TCAFVN

Arabidopsis Description

PER39Peroxidase 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUT2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.