Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
- plastid 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
26583031
|
msms PMID:
26583031
doi
Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Solyc04g008430.1.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G05260.1 | Solyc04g008430.1.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc05g046030.2.1 | Tomato | extracellular | 98.47 | 98.47 |
PGSC0003DMT400013504 | Potato | extracellular | 96.64 | 96.64 |
PGSC0003DMT400038889 | Potato | extracellular | 95.72 | 95.72 |
Solyc05g046010.2.1 | Tomato | extracellular | 89.91 | 89.91 |
Solyc07g052540.2.1 | Tomato | extracellular | 81.65 | 81.16 |
Solyc07g052530.2.1 | Tomato | extracellular | 80.43 | 79.94 |
Solyc07g052550.1.1 | Tomato | extracellular | 79.82 | 79.33 |
Solyc07g049240.2.1 | Tomato | extracellular | 78.59 | 77.64 |
Solyc07g047740.2.1 | Tomato | extracellular | 77.98 | 77.04 |
Solyc07g052510.2.1 | Tomato | extracellular | 76.15 | 75.91 |
Solyc04g056420.1.1 | Tomato | extracellular | 58.72 | 70.33 |
Bra032474.1-P | Field mustard | extracellular | 59.33 | 67.6 |
KRH26821 | Soybean | endoplasmic reticulum | 67.28 | 67.48 |
KRH22535 | Soybean | extracellular | 66.67 | 67.28 |
Bra031309.1-P | Field mustard | extracellular | 66.97 | 67.18 |
CDY38641 | Canola | extracellular | 66.97 | 67.18 |
KRH26822 | Soybean | endoplasmic reticulum | 66.97 | 67.18 |
KRH22534 | Soybean | extracellular | 66.67 | 66.87 |
CDY10037 | Canola | extracellular | 66.67 | 66.87 |
CDY55649 | Canola | vacuole | 66.97 | 66.57 |
Bra023862.1-P | Field mustard | vacuole | 66.97 | 66.57 |
CDY59800 | Canola | extracellular | 66.36 | 66.56 |
Bra015404.1-P | Field mustard | extracellular | 66.36 | 66.56 |
CDY46845 | Canola | extracellular | 66.36 | 66.56 |
CDY19299 | Canola | vacuole | 66.67 | 66.26 |
AT3G21770.1 | Thale cress | extracellular | 66.06 | 65.65 |
AT1G05260.1 | Thale cress | extracellular | 65.44 | 65.64 |
KRH56093 | Soybean | extracellular | 64.83 | 65.23 |
CDY49518 | Canola | extracellular | 64.83 | 65.03 |
CDX86795 | Canola | extracellular | 64.53 | 64.72 |
Bra035235.1-P | Field mustard | extracellular | 64.53 | 64.72 |
GSMUA_Achr2P03020_001 | Banana | extracellular | 59.94 | 64.47 |
CDY13252 | Canola | extracellular | 64.22 | 64.42 |
AT4G11290.1 | Thale cress | extracellular | 62.69 | 62.88 |
KRH25412 | Soybean | extracellular | 62.08 | 62.65 |
KRH56092 | Soybean | extracellular, mitochondrion | 62.08 | 62.65 |
EER88826 | Sorghum | extracellular | 63.3 | 62.54 |
GSMUA_Achr9P30170_001 | Banana | extracellular | 56.57 | 62.5 |
TraesCS7B01G353200.1 | Wheat | extracellular | 61.77 | 61.03 |
TraesCS7D01G442300.1 | Wheat | extracellular | 61.77 | 60.84 |
TraesCS7A01G453000.1 | Wheat | extracellular | 61.16 | 60.42 |
HORVU7Hr1G102480.7 | Barley | extracellular | 62.39 | 60.35 |
CDY33143 | Canola | extracellular | 66.97 | 60.0 |
TraesCS7A01G452900.1 | Wheat | extracellular | 60.24 | 59.34 |
TraesCS7D01G442200.1 | Wheat | extracellular | 59.94 | 59.04 |
Os06t0681600-01 | Rice | extracellular | 59.33 | 57.57 |
Zm00001d014467_P002 | Maize | vacuole | 62.69 | 56.79 |
Solyc12g005790.1.1 | Tomato | extracellular | 54.13 | 54.63 |
KRH25410 | Soybean | cytosol | 40.98 | 54.47 |
Solyc08g075830.2.1 | Tomato | extracellular | 53.52 | 54.35 |
Solyc05g046000.2.1 | Tomato | extracellular | 52.91 | 53.73 |
TraesCS7B01G353100.1 | Wheat | extracellular | 59.94 | 53.41 |
Solyc12g005370.1.1 | Tomato | extracellular | 53.52 | 53.35 |
TraesCS6A01G136500.1 | Wheat | extracellular | 53.21 | 53.21 |
CDY10042 | Canola | extracellular | 25.99 | 52.47 |
TraesCS6B01G164400.2 | Wheat | extracellular | 54.13 | 51.6 |
Solyc01g067850.2.1 | Tomato | extracellular | 51.07 | 51.54 |
TraesCS6D01G125500.1 | Wheat | extracellular | 54.13 | 51.45 |
Os02t0161800-01 | Rice | extracellular, mitochondrion | 53.82 | 50.57 |
HORVU6Hr1G026230.5 | Barley | extracellular | 52.6 | 50.0 |
EES06321 | Sorghum | extracellular, golgi, plastid | 53.52 | 49.72 |
Solyc01g067860.2.1 | Tomato | extracellular | 46.48 | 46.34 |
Solyc06g054500.1.1 | Tomato | extracellular | 45.57 | 45.85 |
Solyc01g067880.1.1 | Tomato | mitochondrion | 35.78 | 45.17 |
Solyc01g105070.2.1 | Tomato | extracellular | 44.95 | 44.28 |
Solyc02g064970.2.1 | Tomato | extracellular | 43.43 | 43.56 |
Zm00001d053839_P001 | Maize | extracellular | 29.36 | 43.24 |
Solyc01g104860.2.1 | Tomato | extracellular | 39.45 | 40.31 |
Solyc01g067870.2.1 | Tomato | extracellular | 45.87 | 39.79 |
Solyc10g047110.1.1 | Tomato | extracellular | 32.72 | 37.41 |
Solyc04g064690.2.1 | Tomato | extracellular, vacuole | 38.23 | 32.3 |
Protein Annotations
KEGG:00940+1.11.1.7 | Gene3D:1.10.420.10 | Gene3D:1.10.520.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0004601 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005618 | GO:GO:0005623 |
GO:GO:0006950 | GO:GO:0006979 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009505 |
GO:GO:0009506 | GO:GO:0009664 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016491 | GO:GO:0020037 |
GO:GO:0030312 | GO:GO:0042744 | GO:GO:0046872 | GO:GO:0055114 | GO:GO:0098869 | InterPro:Haem_peroxidase |
InterPro:Haem_peroxidase_pln/fun/bac | InterPro:IPR002016 | UniProt:K4C0T5 | PFAM:PF00141 | PRINTS:PR00458 | PRINTS:PR00461 |
ScanProsite:PS00435 | ScanProsite:PS00436 | PFscan:PS50873 | PANTHER:PTHR31235 | PANTHER:PTHR31235:SF39 | InterPro:Peroxidase_pln |
InterPro:Peroxidases_AS | InterPro:Peroxidases_heam-ligand_BS | SUPFAM:SSF48113 | InterPro:Secretory_peroxidase | SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc05g046020.2 |
EnsemblPlants:Solyc05g046020.2.1 | UniParc:UPI00027668EC | SEG:seg | : | : | : |
Description
Peroxidase [Source:UniProtKB/TrEMBL;Acc:K4C0T5]
Coordinates
chr5:+:58103304..58104907
Molecular Weight (calculated)
35834.9 Da
IEP (calculated)
7.672
GRAVY (calculated)
-0.081
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MATFVYLCPL ILMCMLVSSN AQLQQNFYAK SCPKAEKIIL EYVHKHIPNA PSLAAALIRM HFHDCFVRGC DASVLLNFTS STGNQTEKVG APNLTLRGFS
101: FIDNVKKIIE DECPGVVSCA DIVALVARDS VVVTGGPSWS VPTGRRDGRI SNASETLTDI PAPTSNFSTL QNDFAKKGLD LKDLVLLSGA HTIGISHCSS
201: FSTRLYNFTG TFGTEDPSLD SEYAANLKAN KCKSINDNTT IVEMDPGSFR TFDLSYYKLL LKRRGLFQSD AALTTSTTTK TYIEQLVAGS LKEFYAEFAQ
301: SMEKMGRIEV KTRSDGEIRK HCAVVNS
101: FIDNVKKIIE DECPGVVSCA DIVALVARDS VVVTGGPSWS VPTGRRDGRI SNASETLTDI PAPTSNFSTL QNDFAKKGLD LKDLVLLSGA HTIGISHCSS
201: FSTRLYNFTG TFGTEDPSLD SEYAANLKAN KCKSINDNTT IVEMDPGSFR TFDLSYYKLL LKRRGLFQSD AALTTSTTTK TYIEQLVAGS LKEFYAEFAQ
301: SMEKMGRIEV KTRSDGEIRK HCAVVNS
001: MKTMTQLNIA VVVVVTVLIG MLRSSEAQLQ MNFYAKSCPN AEKIISDHIQ NHIHNGPSLA APLIRMHFHD CFVRGCDGSV LINSTSGNAE RDAPPNLTLR
101: GFGFVERIKA LLEKVCPKTV SCADIIALTA RDAVVATGGP SWSVPTGRRD GRISNKTEAT NNIPPPTSNF TTLQRLFKNQ GLNLKDLVLL SGAHTIGVSH
201: CSSMNTRLYN FSTTVKQDPS LDSQYAANLK ANKCKSLNDN STILEMDPGS SRSFDLSYYR LVLKRRGLFQ SDSALTTNSA TLKVINDLVN GSEKKFFKAF
301: AKSMEKMGRV KVKTGSAGVI RTRCSVAGS
101: GFGFVERIKA LLEKVCPKTV SCADIIALTA RDAVVATGGP SWSVPTGRRD GRISNKTEAT NNIPPPTSNF TTLQRLFKNQ GLNLKDLVLL SGAHTIGVSH
201: CSSMNTRLYN FSTTVKQDPS LDSQYAANLK ANKCKSLNDN STILEMDPGS SRSFDLSYYR LVLKRRGLFQ SDSALTTNSA TLKVINDLVN GSEKKFFKAF
301: AKSMEKMGRV KVKTGSAGVI RTRCSVAGS
Arabidopsis Description
PER30Peroxidase 30 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSY7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.