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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 8
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • plastid 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, plastid, secretory
BaCelLo:secretory
EpiLoc:plastid
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:cytosol
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:extracellular
extracellular: 26583031
msms PMID: 26583031 doi
F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken
Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G05260.1 Solyc04g008430.1.1 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc05g046030.2.1 Tomato extracellular 98.47 98.47
PGSC0003DMT400013504 Potato extracellular 96.64 96.64
PGSC0003DMT400038889 Potato extracellular 95.72 95.72
Solyc05g046010.2.1 Tomato extracellular 89.91 89.91
Solyc07g052540.2.1 Tomato extracellular 81.65 81.16
Solyc07g052530.2.1 Tomato extracellular 80.43 79.94
Solyc07g052550.1.1 Tomato extracellular 79.82 79.33
Solyc07g049240.2.1 Tomato extracellular 78.59 77.64
Solyc07g047740.2.1 Tomato extracellular 77.98 77.04
Solyc07g052510.2.1 Tomato extracellular 76.15 75.91
Solyc04g056420.1.1 Tomato extracellular 58.72 70.33
Bra032474.1-P Field mustard extracellular 59.33 67.6
KRH26821 Soybean endoplasmic reticulum 67.28 67.48
KRH22535 Soybean extracellular 66.67 67.28
Bra031309.1-P Field mustard extracellular 66.97 67.18
CDY38641 Canola extracellular 66.97 67.18
KRH26822 Soybean endoplasmic reticulum 66.97 67.18
KRH22534 Soybean extracellular 66.67 66.87
CDY10037 Canola extracellular 66.67 66.87
CDY55649 Canola vacuole 66.97 66.57
Bra023862.1-P Field mustard vacuole 66.97 66.57
CDY59800 Canola extracellular 66.36 66.56
Bra015404.1-P Field mustard extracellular 66.36 66.56
CDY46845 Canola extracellular 66.36 66.56
CDY19299 Canola vacuole 66.67 66.26
AT3G21770.1 Thale cress extracellular 66.06 65.65
AT1G05260.1 Thale cress extracellular 65.44 65.64
KRH56093 Soybean extracellular 64.83 65.23
CDY49518 Canola extracellular 64.83 65.03
CDX86795 Canola extracellular 64.53 64.72
Bra035235.1-P Field mustard extracellular 64.53 64.72
GSMUA_Achr2P03020_001 Banana extracellular 59.94 64.47
CDY13252 Canola extracellular 64.22 64.42
AT4G11290.1 Thale cress extracellular 62.69 62.88
KRH25412 Soybean extracellular 62.08 62.65
KRH56092 Soybean extracellular, mitochondrion 62.08 62.65
EER88826 Sorghum extracellular 63.3 62.54
GSMUA_Achr9P30170_001 Banana extracellular 56.57 62.5
TraesCS7B01G353200.1 Wheat extracellular 61.77 61.03
TraesCS7D01G442300.1 Wheat extracellular 61.77 60.84
TraesCS7A01G453000.1 Wheat extracellular 61.16 60.42
HORVU7Hr1G102480.7 Barley extracellular 62.39 60.35
CDY33143 Canola extracellular 66.97 60.0
TraesCS7A01G452900.1 Wheat extracellular 60.24 59.34
TraesCS7D01G442200.1 Wheat extracellular 59.94 59.04
Os06t0681600-01 Rice extracellular 59.33 57.57
Zm00001d014467_P002 Maize vacuole 62.69 56.79
Solyc12g005790.1.1 Tomato extracellular 54.13 54.63
KRH25410 Soybean cytosol 40.98 54.47
Solyc08g075830.2.1 Tomato extracellular 53.52 54.35
Solyc05g046000.2.1 Tomato extracellular 52.91 53.73
TraesCS7B01G353100.1 Wheat extracellular 59.94 53.41
Solyc12g005370.1.1 Tomato extracellular 53.52 53.35
TraesCS6A01G136500.1 Wheat extracellular 53.21 53.21
CDY10042 Canola extracellular 25.99 52.47
TraesCS6B01G164400.2 Wheat extracellular 54.13 51.6
Solyc01g067850.2.1 Tomato extracellular 51.07 51.54
TraesCS6D01G125500.1 Wheat extracellular 54.13 51.45
Os02t0161800-01 Rice extracellular, mitochondrion 53.82 50.57
HORVU6Hr1G026230.5 Barley extracellular 52.6 50.0
EES06321 Sorghum extracellular, golgi, plastid 53.52 49.72
Solyc01g067860.2.1 Tomato extracellular 46.48 46.34
Solyc06g054500.1.1 Tomato extracellular 45.57 45.85
Solyc01g067880.1.1 Tomato mitochondrion 35.78 45.17
Solyc01g105070.2.1 Tomato extracellular 44.95 44.28
Solyc02g064970.2.1 Tomato extracellular 43.43 43.56
Zm00001d053839_P001 Maize extracellular 29.36 43.24
Solyc01g104860.2.1 Tomato extracellular 39.45 40.31
Solyc01g067870.2.1 Tomato extracellular 45.87 39.79
Solyc10g047110.1.1 Tomato extracellular 32.72 37.41
Solyc04g064690.2.1 Tomato extracellular, vacuole 38.23 32.3
Protein Annotations
KEGG:00940+1.11.1.7Gene3D:1.10.420.10Gene3D:1.10.520.10MapMan:35.1GO:GO:0003674GO:GO:0003824
GO:GO:0004601GO:GO:0005488GO:GO:0005575GO:GO:0005576GO:GO:0005618GO:GO:0005623
GO:GO:0006950GO:GO:0006979GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009505
GO:GO:0009506GO:GO:0009664GO:GO:0009987GO:GO:0016043GO:GO:0016491GO:GO:0020037
GO:GO:0030312GO:GO:0042744GO:GO:0046872GO:GO:0055114GO:GO:0098869InterPro:Haem_peroxidase
InterPro:Haem_peroxidase_pln/fun/bacInterPro:IPR002016UniProt:K4C0T5PFAM:PF00141PRINTS:PR00458PRINTS:PR00461
ScanProsite:PS00435ScanProsite:PS00436PFscan:PS50873PANTHER:PTHR31235PANTHER:PTHR31235:SF39InterPro:Peroxidase_pln
InterPro:Peroxidases_ASInterPro:Peroxidases_heam-ligand_BSSUPFAM:SSF48113InterPro:Secretory_peroxidaseSignalP:SignalP-noTMEnsemblPlantsGene:Solyc05g046020.2
EnsemblPlants:Solyc05g046020.2.1UniParc:UPI00027668ECSEG:seg:::
Description
Peroxidase [Source:UniProtKB/TrEMBL;Acc:K4C0T5]
Coordinates
chr5:+:58103304..58104907
Molecular Weight (calculated)
35834.9 Da
IEP (calculated)
7.672
GRAVY (calculated)
-0.081
Length
327 amino acids
Sequence
(BLAST)
001: MATFVYLCPL ILMCMLVSSN AQLQQNFYAK SCPKAEKIIL EYVHKHIPNA PSLAAALIRM HFHDCFVRGC DASVLLNFTS STGNQTEKVG APNLTLRGFS
101: FIDNVKKIIE DECPGVVSCA DIVALVARDS VVVTGGPSWS VPTGRRDGRI SNASETLTDI PAPTSNFSTL QNDFAKKGLD LKDLVLLSGA HTIGISHCSS
201: FSTRLYNFTG TFGTEDPSLD SEYAANLKAN KCKSINDNTT IVEMDPGSFR TFDLSYYKLL LKRRGLFQSD AALTTSTTTK TYIEQLVAGS LKEFYAEFAQ
301: SMEKMGRIEV KTRSDGEIRK HCAVVNS
Best Arabidopsis Sequence Match ( AT3G21770.1 )
(BLAST)
001: MKTMTQLNIA VVVVVTVLIG MLRSSEAQLQ MNFYAKSCPN AEKIISDHIQ NHIHNGPSLA APLIRMHFHD CFVRGCDGSV LINSTSGNAE RDAPPNLTLR
101: GFGFVERIKA LLEKVCPKTV SCADIIALTA RDAVVATGGP SWSVPTGRRD GRISNKTEAT NNIPPPTSNF TTLQRLFKNQ GLNLKDLVLL SGAHTIGVSH
201: CSSMNTRLYN FSTTVKQDPS LDSQYAANLK ANKCKSLNDN STILEMDPGS SRSFDLSYYR LVLKRRGLFQ SDSALTTNSA TLKVINDLVN GSEKKFFKAF
301: AKSMEKMGRV KVKTGSAGVI RTRCSVAGS
Arabidopsis Description
PER30Peroxidase 30 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSY7]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.