CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

plastid 2
extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05260.1	KRH42483	AT2G01950.1	19000166
AT1G05260.1	KRH58580	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25412	Soybean	extracellular	92.9	92.9
KRH56093	Soybean	extracellular	86.42	86.15
KRH26822	Soybean	endoplasmic reticulum	71.6	71.17
KRH22534	Soybean	extracellular	70.99	70.55
KRH26821	Soybean	endoplasmic reticulum	70.06	69.63
KRH25410	Soybean	cytosol	52.47	69.11
KRH22535	Soybean	extracellular	68.83	68.83
PGSC0003DMT400013504	Potato	extracellular	63.27	62.69
PGSC0003DMT400038889	Potato	extracellular	63.27	62.69
Solyc07g052540.2.1	Tomato	extracellular	63.58	62.61
PGSC0003DMT400065517	Potato	extracellular	63.27	62.31
Solyc05g046030.2.1	Tomato	extracellular	62.65	62.08
Solyc05g046020.2.1	Tomato	extracellular	62.65	62.08
Solyc07g052550.1.1	Tomato	extracellular	62.96	62.01
PGSC0003DMT400065516	Potato	extracellular	62.96	62.01
Solyc07g052530.2.1	Tomato	extracellular	62.96	62.01
Solyc07g052510.2.1	Tomato	extracellular	62.35	61.59
CDY46845	Canola	extracellular	61.73	61.35
Bra015404.1-P	Field mustard	extracellular	61.73	61.35
CDY10037	Canola	extracellular	61.73	61.35
PGSC0003DMT400013520	Potato	extracellular	61.73	61.16
CDY59800	Canola	extracellular	61.42	61.04
Solyc05g046010.2.1	Tomato	extracellular	61.42	60.86
AT1G05260.1	Thale cress	extracellular	61.11	60.74
PGSC0003DMT400065518	Potato	extracellular	61.11	60.37
Bra032474.1-P	Field mustard	extracellular	53.4	60.28
Solyc07g047740.2.1	Tomato	extracellular	60.49	59.21
PGSC0003DMT400001848	Potato	extracellular	60.49	59.21
CDY13252	Canola	extracellular	59.57	59.2
CDY49518	Canola	extracellular	59.57	59.2
Solyc07g049240.2.1	Tomato	extracellular	60.19	58.91
CDX86795	Canola	extracellular	58.95	58.59
Bra035235.1-P	Field mustard	extracellular	58.95	58.59
Bra031309.1-P	Field mustard	extracellular	58.64	58.28
CDY38641	Canola	extracellular	58.64	58.28
GSMUA_Achr9P30170_001	Banana	extracellular	53.09	58.11
AT4G11290.1	Thale cress	extracellular	58.33	57.98
GSMUA_Achr2P03020_001	Banana	extracellular	54.32	57.89
EER88826	Sorghum	extracellular	58.64	57.4
AT3G21770.1	Thale cress	extracellular	58.02	57.14
CDY19299	Canola	vacuole	58.02	57.14
Bra023862.1-P	Field mustard	vacuole	57.41	56.53
CDY55649	Canola	vacuole	57.41	56.53
Solyc04g056420.1.1	Tomato	extracellular	47.53	56.41
CDY10042	Canola	extracellular	27.47	54.94
Os06t0681600-01	Rice	extracellular	56.48	54.3
TraesCS7B01G353200.1	Wheat	extracellular	55.25	54.08
TraesCS7D01G442300.1	Wheat	extracellular	55.25	53.92
TraesCS7A01G453000.1	Wheat	extracellular	54.94	53.78
HORVU7Hr1G102480.7	Barley	extracellular	55.86	53.55
TraesCS7D01G442200.1	Wheat	extracellular	54.32	53.01
TraesCS7A01G452900.1	Wheat	extracellular	54.32	53.01
KRH68092	Soybean	endoplasmic reticulum	52.16	52.48
Zm00001d014467_P002	Maize	vacuole	57.72	51.8
TraesCS6A01G136500.1	Wheat	extracellular	52.16	51.68
KRH68093	Soybean	endoplasmic reticulum	51.54	51.54
CDY33143	Canola	extracellular	57.72	51.23
KRH31947	Soybean	extracellular	49.69	50.0
TraesCS6B01G164400.2	Wheat	extracellular	52.16	49.27
KRH71514	Soybean	extracellular	48.77	49.07
TraesCS6D01G125500.1	Wheat	extracellular	51.85	48.84
HORVU6Hr1G026230.5	Barley	extracellular	51.85	48.84
Os02t0161800-01	Rice	extracellular, mitochondrion	52.16	48.56
TraesCS7B01G353100.1	Wheat	extracellular	54.32	47.96
EES06321	Sorghum	extracellular, golgi, plastid	49.69	45.74
KRH10518	Soybean	extracellular	45.06	45.34
KRH43912	Soybean	endoplasmic reticulum	45.37	45.23
KRH10519	Soybean	endoplasmic reticulum	45.06	44.92
KRH54959	Soybean	extracellular	44.75	44.89
KRH43911	Soybean	extracellular	42.28	42.68
KRH20268	Soybean	extracellular, golgi, mitochondrion, plasma membrane	43.21	40.35
KRH10491	Soybean	extracellular	40.12	40.25
KRG96357	Soybean	extracellular	25.0	39.71
KRH43937	Soybean	extracellular	39.51	39.51
Zm00001d053839_P001	Maize	extracellular	26.85	39.19
PGSC0003DMT400001851	Potato	extracellular	60.19	32.94

Protein Annotations

KEGG:00940+1.11.1.7	Gene3D:1.10.420.10	Gene3D:1.10.520.10	MapMan:35.1	UniProt:A0A0R4J3J1	EMBL:ACUP02004095
EnsemblPlantsGene:GLYMA_06G302600	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009505	GO:GO:0009506	GO:GO:0009664	GO:GO:0009987
GO:GO:0016043	GO:GO:0016491	GO:GO:0020037	GO:GO:0030312	GO:GO:0042744	GO:GO:0046872
GO:GO:0055114	GO:GO:0098869	InterPro:Haem_peroxidase	InterPro:Haem_peroxidase_pln/fun/bac	InterPro:IPR002016	EnsemblPlants:KRH56092
ProteinID:KRH56092	ProteinID:KRH56092.1	PFAM:PF00141	PRINTS:PR00458	PRINTS:PR00461	ScanProsite:PS00435
ScanProsite:PS00436	PFscan:PS50873	PANTHER:PTHR31235	PANTHER:PTHR31235:SF39	MetaCyc:PWY-5461	MetaCyc:PWY-5466
MetaCyc:PWY-5469	MetaCyc:PWY-6824	MetaCyc:PWY-7214	MetaCyc:PWY-7445	InterPro:Peroxidase_pln	InterPro:Peroxidases_AS
InterPro:Peroxidases_heam-ligand_BS	SUPFAM:SSF48113	InterPro:Secretory_peroxidase	SignalP:SignalP-noTM	UniParc:UPI000189D1EF	:

Description

hypothetical protein

Coordinates

chr6:-:49188436..49191408

Molecular Weight (calculated)

35267.4 Da

IEP (calculated)

8.156

GRAVY (calculated)

-0.049

Length

324 amino acids

Sequence
(BLAST)

001: MGSQSYFKAL IICLIALIGS TQAQLQLGFY AKSCPKAEQI ILKYVVEHIH NAPSLAAALI RLHFHDCFVN GCDGSVLVDS TPGNQAEKDA IPNLTLRGFG
101: FIEAIKRLVE AECPGVVSCA DILALTARDS IHATGGPYWN VPTGRRDGFI SRAADPLRSL PAPFHNLTTQ LTLFGNVGLD ANDLVLLVGA HTIGIAHCSS
201: ISTRLYNFTG KGDTDPTIDN GYAKNLKTFK CKNINDNSLI EMDPGSRDTF DLGYYKQVVK RRGLFQSDAE LLTSPITRSI IASQLQSTQG FFAEFAKSME
301: KMGRINVKLG SEGEIRKHCA RVNN

Best Arabidopsis Sequence Match ( AT1G05260.1 )
(BLAST)

001: MNCLIAIALS VSFFLVGIVG PIQAQLQMNF YANSCPNAEK IVQDFVSNHV SNAPSLAAAL IRMHFHDCFV RGCDGSVLIN STSGNAERDA TPNLTVRGFG
101: FIDAIKSVLE AQCPGIVSCA DIIALASRDA VVFTGGPNWS VPTGRRDGRI SNAAEALANI PPPTSNITNL QTLFANQGLD LKDLVLLSGA HTIGVSHCSS
201: FTNRLYNFTG RGGQDPALDS EYAANLKSRK CPSLNDNKTI VEMDPGSRKT FDLSYYQLVL KRRGLFQSDS ALTTNPTTLS NINRILTGSV GSFFSEFAKS
301: MEKMGRINVK TGSAGVVRRQ CSVANS

Arabidopsis Description

PER3Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q0WSR2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.