Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G05260.1 | KRH42483 | AT2G01950.1 | 19000166 |
| AT1G05260.1 | KRH58580 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH22535 | Soybean | extracellular | 96.63 | 97.22 |
| KRH26822 | Soybean | endoplasmic reticulum | 94.17 | 94.17 |
| KRH22534 | Soybean | extracellular | 93.56 | 93.56 |
| KRH56093 | Soybean | extracellular | 70.86 | 71.08 |
| KRH56092 | Soybean | extracellular, mitochondrion | 69.63 | 70.06 |
| KRH25412 | Soybean | extracellular | 68.71 | 69.14 |
| Bra032474.1-P | Field mustard | extracellular | 60.74 | 68.99 |
| CDY10037 | Canola | extracellular | 68.71 | 68.71 |
| CDY46845 | Canola | extracellular | 68.4 | 68.4 |
| CDY59800 | Canola | extracellular | 68.1 | 68.1 |
| Bra015404.1-P | Field mustard | extracellular | 68.1 | 68.1 |
| PGSC0003DMT400038889 | Potato | extracellular | 68.1 | 67.89 |
| AT1G05260.1 | Thale cress | extracellular | 67.48 | 67.48 |
| Solyc05g046030.2.1 | Tomato | extracellular | 67.48 | 67.28 |
| Solyc05g046020.2.1 | Tomato | extracellular | 67.48 | 67.28 |
| PGSC0003DMT400013504 | Potato | extracellular | 67.48 | 67.28 |
| AT4G11290.1 | Thale cress | extracellular | 67.18 | 67.18 |
| Solyc07g052540.2.1 | Tomato | extracellular | 67.79 | 67.17 |
| Solyc07g052530.2.1 | Tomato | extracellular | 67.48 | 66.87 |
| PGSC0003DMT400013520 | Potato | extracellular | 66.87 | 66.67 |
| Solyc05g046010.2.1 | Tomato | extracellular | 66.87 | 66.67 |
| Solyc07g052510.2.1 | Tomato | extracellular | 66.87 | 66.46 |
| PGSC0003DMT400065516 | Potato | extracellular | 66.87 | 66.26 |
| PGSC0003DMT400065517 | Potato | extracellular | 66.87 | 66.26 |
| CDY13252 | Canola | extracellular | 66.26 | 66.26 |
| Bra035235.1-P | Field mustard | extracellular | 65.95 | 65.95 |
| CDY49518 | Canola | extracellular | 65.95 | 65.95 |
| CDX86795 | Canola | extracellular | 65.95 | 65.95 |
| Solyc07g052550.1.1 | Tomato | extracellular | 65.95 | 65.35 |
| Bra031309.1-P | Field mustard | extracellular | 65.34 | 65.34 |
| CDY38641 | Canola | extracellular | 65.34 | 65.34 |
| PGSC0003DMT400065518 | Potato | extracellular | 65.64 | 65.24 |
| Solyc07g047740.2.1 | Tomato | extracellular | 65.95 | 64.95 |
| PGSC0003DMT400001848 | Potato | extracellular | 65.64 | 64.65 |
| Solyc07g049240.2.1 | Tomato | extracellular | 65.64 | 64.65 |
| CDY19299 | Canola | vacuole | 64.42 | 63.83 |
| AT3G21770.1 | Thale cress | extracellular | 64.11 | 63.53 |
| CDY55649 | Canola | vacuole | 64.11 | 63.53 |
| GSMUA_Achr9P30170_001 | Banana | extracellular | 57.67 | 63.51 |
| Bra023862.1-P | Field mustard | vacuole | 63.8 | 63.22 |
| EER88826 | Sorghum | extracellular | 62.58 | 61.63 |
| GSMUA_Achr2P03020_001 | Banana | extracellular | 56.44 | 60.53 |
| Solyc04g056420.1.1 | Tomato | extracellular | 49.69 | 59.34 |
| TraesCS7D01G442300.1 | Wheat | extracellular | 60.12 | 59.04 |
| TraesCS7B01G353200.1 | Wheat | extracellular | 59.82 | 58.91 |
| TraesCS7A01G453000.1 | Wheat | extracellular | 59.82 | 58.91 |
| HORVU7Hr1G102480.7 | Barley | extracellular | 60.43 | 58.28 |
| KRH25410 | Soybean | cytosol | 43.87 | 58.13 |
| CDY33143 | Canola | extracellular | 65.03 | 58.08 |
| Os06t0681600-01 | Rice | extracellular | 59.51 | 57.57 |
| TraesCS7D01G442200.1 | Wheat | extracellular | 57.98 | 56.93 |
| TraesCS7A01G452900.1 | Wheat | extracellular | 57.36 | 56.33 |
| KRH31947 | Soybean | extracellular | 54.29 | 54.97 |
| Zm00001d014467_P002 | Maize | vacuole | 60.74 | 54.85 |
| KRH68093 | Soybean | endoplasmic reticulum | 54.29 | 54.63 |
| KRH71514 | Soybean | extracellular | 53.68 | 54.35 |
| TraesCS6A01G136500.1 | Wheat | extracellular | 54.29 | 54.13 |
| KRH68092 | Soybean | endoplasmic reticulum | 53.37 | 54.04 |
| CDY10042 | Canola | extracellular | 26.69 | 53.7 |
| TraesCS6B01G164400.2 | Wheat | extracellular | 54.6 | 51.9 |
| TraesCS7B01G353100.1 | Wheat | extracellular | 57.98 | 51.5 |
| TraesCS6D01G125500.1 | Wheat | extracellular | 54.29 | 51.45 |
| HORVU6Hr1G026230.5 | Barley | extracellular | 53.68 | 50.87 |
| Os02t0161800-01 | Rice | extracellular, mitochondrion | 54.29 | 50.86 |
| EES06321 | Sorghum | extracellular, golgi, plastid | 54.29 | 50.28 |
| KRH43912 | Soybean | endoplasmic reticulum | 46.01 | 46.15 |
| KRH10519 | Soybean | endoplasmic reticulum | 45.71 | 45.85 |
| KRH10518 | Soybean | extracellular | 45.09 | 45.65 |
| Zm00001d053839_P001 | Maize | extracellular | 30.98 | 45.5 |
| KRG96357 | Soybean | extracellular | 27.61 | 44.12 |
| KRH43911 | Soybean | extracellular | 42.94 | 43.61 |
| KRH54959 | Soybean | extracellular | 42.02 | 42.41 |
| KRH10491 | Soybean | extracellular | 41.72 | 42.11 |
| KRH43937 | Soybean | extracellular | 41.41 | 41.67 |
| KRH20268 | Soybean | extracellular, golgi, mitochondrion, plasma membrane | 42.94 | 40.35 |
| PGSC0003DMT400001851 | Potato | extracellular | 64.11 | 35.3 |
Protein Annotations
| KEGG:00940+1.11.1.7 | Gene3D:1.10.420.10 | Gene3D:1.10.520.10 | MapMan:35.1 | EntrezGene:547871 | UniProt:A0A0R4J4U7 |
| EMBL:ACUP02007749 | EnsemblPlantsGene:GLYMA_12G195500 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004601 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005576 | GO:GO:0006950 | GO:GO:0006979 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016491 | GO:GO:0020037 | GO:GO:0042744 | GO:GO:0046872 |
| GO:GO:0055114 | GO:GO:0098869 | InterPro:Haem_peroxidase | InterPro:Haem_peroxidase_pln/fun/bac | InterPro:IPR002016 | EnsemblPlants:KRH26821 |
| ProteinID:KRH26821 | ProteinID:KRH26821.1 | PFAM:PF00141 | PRINTS:PR00458 | PRINTS:PR00461 | ScanProsite:PS00435 |
| ScanProsite:PS00436 | PFscan:PS50873 | PANTHER:PTHR31235 | PANTHER:PTHR31235:SF39 | MetaCyc:PWY-5461 | MetaCyc:PWY-5466 |
| MetaCyc:PWY-5469 | MetaCyc:PWY-6824 | MetaCyc:PWY-7214 | MetaCyc:PWY-7445 | InterPro:Peroxidase_pln | InterPro:Peroxidases_AS |
| InterPro:Peroxidases_heam-ligand_BS | SUPFAM:SSF48113 | InterPro:Secretory_peroxidase | SignalP:SignalP-noTM | UniParc:UPI000189D1F3 | : |
Description
hypothetical protein
Coordinates
chr12:+:35691004..35692929
Molecular Weight (calculated)
35668.7 Da
IEP (calculated)
7.502
GRAVY (calculated)
-0.060
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MKMGSNFRFL SLCLLALIAS THAQLQLGFY AKSCPNAEQI VLKFVHDHIH NAPSLAAALI RMHFHDCFVR GCDASVLLNS TTNQAEKNAP PNLTVRGFDF
101: IDRIKSLVEA ECPGVVSCAD ILTLSARDTI VATGGPFWKV PTGRRDGVIS NLTEARDNIP APSSNFTTLQ TLFANQGLDL KDLVLLSGAH TIGIAHCSSL
201: SNRLFNFTGK GDQDPSLDSE YAANLKAFKC TDLNKLNTTK IEMDPGSRKT FDLSYYSHVI KRRGLFESDA ALLTNSVTKA QIIELLEGSV ENFFAEFATS
301: MEKMGRINVK TGTEGEIRKH CAFVNS
101: IDRIKSLVEA ECPGVVSCAD ILTLSARDTI VATGGPFWKV PTGRRDGVIS NLTEARDNIP APSSNFTTLQ TLFANQGLDL KDLVLLSGAH TIGIAHCSSL
201: SNRLFNFTGK GDQDPSLDSE YAANLKAFKC TDLNKLNTTK IEMDPGSRKT FDLSYYSHVI KRRGLFESDA ALLTNSVTKA QIIELLEGSV ENFFAEFATS
301: MEKMGRINVK TGTEGEIRKH CAFVNS
001: MNCLIAIALS VSFFLVGIVG PIQAQLQMNF YANSCPNAEK IVQDFVSNHV SNAPSLAAAL IRMHFHDCFV RGCDGSVLIN STSGNAERDA TPNLTVRGFG
101: FIDAIKSVLE AQCPGIVSCA DIIALASRDA VVFTGGPNWS VPTGRRDGRI SNAAEALANI PPPTSNITNL QTLFANQGLD LKDLVLLSGA HTIGVSHCSS
201: FTNRLYNFTG RGGQDPALDS EYAANLKSRK CPSLNDNKTI VEMDPGSRKT FDLSYYQLVL KRRGLFQSDS ALTTNPTTLS NINRILTGSV GSFFSEFAKS
301: MEKMGRINVK TGSAGVVRRQ CSVANS
101: FIDAIKSVLE AQCPGIVSCA DIIALASRDA VVFTGGPNWS VPTGRRDGRI SNAAEALANI PPPTSNITNL QTLFANQGLD LKDLVLLSGA HTIGVSHCSS
201: FTNRLYNFTG RGGQDPALDS EYAANLKSRK CPSLNDNKTI VEMDPGSRKT FDLSYYQLVL KRRGLFQSDS ALTTNPTTLS NINRILTGSV GSFFSEFAKS
301: MEKMGRINVK TGSAGVVRRQ CSVANS
Arabidopsis Description
PER3Peroxidase [Source:UniProtKB/TrEMBL;Acc:Q0WSR2]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.