CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

plastid 4
mitochondrion 1
peroxisome 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029861_P002	Maize	plastid	81.36	90.2
TraesCS1A01G284600.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	70.37	74.37
TraesCS1B01G293900.1	Wheat	cytosol, peroxisome, plasma membrane	71.45	73.92
TraesCS1D01G283600.1	Wheat	cytosol, peroxisome, plasma membrane	71.33	73.7
GSMUA_Achr9P07100_001	Banana	mitochondrion, plasma membrane	44.8	67.45
KRH56816	Soybean	plastid	46.59	47.56
KRH03132	Soybean	plastid	46.12	47.02
KXG32613	Sorghum	cytosol, plastid	37.51	37.97
OQU87817	Sorghum	cytosol	37.99	37.24
EES01429	Sorghum	mitochondrion	41.1	36.44
KXG22389	Sorghum	mitochondrion	40.26	35.21
OQU86843	Sorghum	cytosol	37.87	34.31
EES16102	Sorghum	plastid	36.8	33.62
KXG35704	Sorghum	mitochondrion	40.02	33.27
KXG25273	Sorghum	mitochondrion	39.07	32.44
OQU83587	Sorghum	plastid	40.14	31.14
EES10867	Sorghum	plasma membrane	14.22	15.54

Protein Annotations

MapMan:10.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	UniProt:A0A1Z5S8L5	ncoils:Coil	InterPro:Cyt_b245_heavy_chain
InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0055114	InterPro:IPR017927	EnsemblPlants:OQU92169	ProteinID:OQU92169	ProteinID:OQU92169.1	PFAM:PF01794
PFAM:PF08022	PFAM:PF08030	PRINTS:PR00466	PFscan:PS51384	PANTHER:PTHR11972	PANTHER:PTHR11972:SF127
InterPro:Riboflavin_synthase-like_b-brl	EnsemblPlantsGene:SORBI_3001G303600	SUPFAM:SSF52343	SUPFAM:SSF63380	unigene:Sbi.21087	TMHMM:TMhelix
UniParc:UPI000B425081	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:58666517..58686058

Molecular Weight (calculated)

93904.8 Da

IEP (calculated)

8.877

GRAVY (calculated)

-0.053

Length

837 amino acids

Sequence
(BLAST)

001: MASSHSHEPS SSSKNPAMQP SSSPLSEPGF SGTSPVPVWP AARSPSIQFV SNVVVGDGDA VAASLSACPS STSSGSSSDI EIQVLFQGND DYYVYDDDYS
101: TTTTTSPAAV WSRSTSFHAC SDDGELDVEA AGRSRLLRAQ SLRSMEEFIE RDSTGELRWS ALEGGVLHHF ASRSRRSNAG ESESNSSSVY PLPVNLNINS
201: SRSIGRSPSH GIRIAMDSCD RNSTSRITEK HIKQAIMFSA SLNKLTLNQD EATEYTNLIL EELQTGQGVI QMNVMRKGLS RDLQPTCWAI PLPIKCSQQI
301: LTATIVFFQA QWRRIFVVFL WLMACAALFT WKFMQYRQRL AFEVMGYCLS TAKGAAETLK LNMAIVLLPV CRNTVTWLRR SRVINSAIPF NDNINFHKLV
401: AAGIVIGIIL HGGIHLACDF PRIARAEKTF FGRTIASDFG YHQPSYLEIV ASTEGITGIA MVVLMLIAFL LASSPWRRNP GTLPPLVRQF AGFNSFWYSH
501: HVFIAVYVLL IVHSMFLFLA KDVAEKTTWM YVAIPVVIYV GERFYRMVRS MVFDVKILNA TTYPGKVLAL KVTKPPGFQY RSGMYVFVQC PEVSKFEWHP
601: FSLTSAPDDD HLSIHIRSLG DWSYQMYNVF QQALLSSNSS LPKILFDGPY GAASQDHSKY EIILLIGLGI GATPFISVLK DIANGLDKGH GSLNYHSDRL
701: KKAYFYWVTR EQGSFEWFRD IMKEVSVLDS KQGVIEMYNY LTSVYQEGDK RSMLISVIQA LHFARHGIDI ISKTPVRTHF SRPNWPRVLH GLARRHIGER
801: IGVFYCGPDD LGRQLEKLCH KVNMRTFTRF VFHKEHF

Best Arabidopsis Sequence Match ( AT1G09090.2 )
(BLAST)

001: MREEEMESSS EGETNKISRC KATGSDNPDE DYVEITLEVR DETINTMKAK ATLRSVLSGR LKTMVKSLSF ASRRLDRSKS FGAMFALRGL RFIAKNDAVG
101: RGWDEVAMRF DKLAVEGKLP KSKFGHCIGM VESSEFVNEL FEALVRRRGT TSSSITKTEL FEFWEQITGN SFDDRLQIFF DMVDKNLDGR ITGDEVKEII
201: ALSASANKLS KIKENVDEYA ALIMEELDRD NLGYIELHNL ETLLLQVPSQ SNNSPSSANK RALNKMLSQK LIPTKDRNPV KRFAMNISYF FLENWKRIWV
301: LTLWISICIT LFTWKFLQYK RKTVFEVMGY CVTVAKGSAE TLKFNMALIL LPVCRNTITW LRTKSKLIGS VVPFDDNINF HKVVAFGIAV GIGLHAISHL
401: ACDFPRLLHA KNVEFEPMKK FFGDERPENY GWFMKGTDGW TGVTMVVLML VAYVLAQSWF RRNRANLPKS LKRLTGFNAF WYSHHLFVIV YVLLIVHGYF
501: VYLSKEWYHK TTWMYLAVPV LLYAFERLIR AFRPGAKAVK VLKVAVYPGN VLSLYMSKPK GFKYTSGQYI YINCSDVSPL QWHPFSITSA SGDDYLSVHI
601: RTLGDWTSQL KSLYSKVCQL PSTSQSGLFI ADIGQANNIT RFPRLLIDGP YGAPAQDYRN YDVLLLVGLG IGATPLISII RDVLNNIKNQ NSIERGTNQH
701: IKNYVATKRA YFYWVTREQG SLEWFSEVMN EVAEYDSEGM IELHNYCTSV YEEGDARSAL ITMLQSLHHA KSGIDIVSGT RVRTHFARPN WRSVFKHVAV
801: NHVNQRVGVF YCGNTCIIGE LKRLAQDFSR KTTTKFEFHK ENF

Arabidopsis Description

RBOHBRespiratory burst oxidase homolog protein B [Source:UniProtKB/Swiss-Prot;Acc:Q9SBI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.