Factsheet for TraesCS1A01G284600.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

peroxisome 1
mitochondrion 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, peroxisome
Any Predictor:	cytosol, endoplasmic reticulum, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G283600.1	Wheat	cytosol, peroxisome, plasma membrane	95.33	93.21
TraesCS1B01G293900.1	Wheat	cytosol, peroxisome, plasma membrane	94.82	92.83
Zm00001d029861_P002	Maize	plastid	67.8	71.13
OQU92169	Sorghum	peroxisome, plastid	74.37	70.37
GSMUA_Achr9P07100_001	Banana	mitochondrion, plasma membrane	48.11	68.53
KRH56816	Soybean	plastid	49.12	47.44
KRH03132	Soybean	plastid	48.61	46.89
TraesCS1A01G290700.2	Wheat	mitochondrion	39.14	38.75
TraesCS3A01G354200.2	Wheat	cytosol	40.66	37.84
TraesCS5A01G527600.1	Wheat	cytosol	39.14	36.6
TraesCS5A01G499900.1	Wheat	cytosol	40.4	34.82
TraesCS3A01G182900.1	Wheat	cytosol	39.52	34.74
TraesCS5A01G301700.1	Wheat	cytosol	40.03	34.46
TraesCS1A01G347700.1	Wheat	mitochondrion	41.41	34.13
TraesCS3A01G280200.1	Wheat	mitochondrion	42.05	34.12
TraesCS5A01G093600.1	Wheat	cytosol	37.75	34.09
TraesCS6A01G180600.1	Wheat	mitochondrion	39.9	33.05
TraesCS5A01G211800.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	40.53	32.46
TraesCS1A01G285700.1	Wheat	cytosol	37.37	31.69
TraesCS1A01G357100.1	Wheat	cytosol	22.85	27.8
TraesCS2A01G312600.1	Wheat	plasma membrane	14.65	15.51
TraesCS2A01G396000.1	Wheat	plasma membrane	14.14	14.43

Protein Annotations

MapMan:10.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	InterPro:Cyt_b245_heavy_chain	InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd
InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016491	GO:GO:0055114	InterPro:IPR017927	PFAM:PF01794
PFAM:PF08022	PFAM:PF08030	PRINTS:PR00466	PFscan:PS51384	PANTHER:PTHR11972	PANTHER:PTHR11972:SF127
InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1A01G284600	EnsemblPlants:TraesCS1A01G284600.1
TIGR:cd06186	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:482242453..482251276

Molecular Weight (calculated)

88765.1 Da

IEP (calculated)

8.304

GRAVY (calculated)

-0.075

Length

792 amino acids

Sequence
(BLAST)

001: MSEAHDEFLQ VPIMSSEGPV MIQFVSNPSI AGSSDALSAS LSACPSGRSA SEVEIEVLFH DADGYVYDDD GCCTASLLGC GGEDLESGGA TARLLRSPSP
101: GMEFVERDGK GEPKWSEMER VRFGRSCSSP GKAGENESAS SAEGPVLVNQ NSNPKRSISR SSSHGIRIAL DSCERNSSSN LNEKDIKQAI MFSASLNKLS
201: LSQDEATEYT HLILEEIQTG QGLAKLSGTR KGTLNDLQPT CWSTPIPTKH IQCMTSTAIV FFRAHWRRIW VIVIWLVACA ALFTWKFMQY RQRLAFEVMG
301: YCLPTAKGAA ETLKFNMAIV LLPVCRNTIT WLRRSRSINS VIPFNDNINF HKLVAAGIVI GIILHGGTHL SCDIPRIAMA DKTIFGRTIA RDFGYHQPSY
401: MEIVTSIEGT TGIAMVVLML IAFLLASRPS RRNPGSLPPL VRQMAGFNAF WYSHHLFIVV YVLLIVHSMF LFLAKDVSEK TTWVYVVIPV MIYLGERMFR
501: MVRSMAYESK ILDAMTYPGK VLSLKMAKPP GFRYQSGMYV FVQCPQVSKF EWHPFSLTSA PDDDHLSIHI RSLGDWSYHV YDMFHEALRC SNLDLPKVSI
601: DGPYGAASQD HSKYEIILLI GLGIGATPFI SVLKDIANGL DKEGCAANHH SANGLRKAYF YWVTREQGSF EWFRDIMKEV SARDSKQGVI EMYNYLTSVY
701: QEGDKRSVLI SAIQALHFAR HGIDIISKTP VRTHFSRPNW PRVFHGLARK HIGERIGVFY CGPDDLGRQL ERLCHKMNMR TFTRFVFHKE HF

Best Arabidopsis Sequence Match ( AT1G09090.2 )
(BLAST)

001: MREEEMESSS EGETNKISRC KATGSDNPDE DYVEITLEVR DETINTMKAK ATLRSVLSGR LKTMVKSLSF ASRRLDRSKS FGAMFALRGL RFIAKNDAVG
101: RGWDEVAMRF DKLAVEGKLP KSKFGHCIGM VESSEFVNEL FEALVRRRGT TSSSITKTEL FEFWEQITGN SFDDRLQIFF DMVDKNLDGR ITGDEVKEII
201: ALSASANKLS KIKENVDEYA ALIMEELDRD NLGYIELHNL ETLLLQVPSQ SNNSPSSANK RALNKMLSQK LIPTKDRNPV KRFAMNISYF FLENWKRIWV
301: LTLWISICIT LFTWKFLQYK RKTVFEVMGY CVTVAKGSAE TLKFNMALIL LPVCRNTITW LRTKSKLIGS VVPFDDNINF HKVVAFGIAV GIGLHAISHL
401: ACDFPRLLHA KNVEFEPMKK FFGDERPENY GWFMKGTDGW TGVTMVVLML VAYVLAQSWF RRNRANLPKS LKRLTGFNAF WYSHHLFVIV YVLLIVHGYF
501: VYLSKEWYHK TTWMYLAVPV LLYAFERLIR AFRPGAKAVK VLKVAVYPGN VLSLYMSKPK GFKYTSGQYI YINCSDVSPL QWHPFSITSA SGDDYLSVHI
601: RTLGDWTSQL KSLYSKVCQL PSTSQSGLFI ADIGQANNIT RFPRLLIDGP YGAPAQDYRN YDVLLLVGLG IGATPLISII RDVLNNIKNQ NSIERGTNQH
701: IKNYVATKRA YFYWVTREQG SLEWFSEVMN EVAEYDSEGM IELHNYCTSV YEEGDARSAL ITMLQSLHHA KSGIDIVSGT RVRTHFARPN WRSVFKHVAV
801: NHVNQRVGVF YCGNTCIIGE LKRLAQDFSR KTTTKFEFHK ENF

Arabidopsis Description

RBOHBRespiratory burst oxidase homolog protein B [Source:UniProtKB/Swiss-Prot;Acc:Q9SBI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.