Factsheet for TraesCS1A01G347700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
peroxisome 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G187300.1
TraesCS4B01G131000.1
TraesCS4D01G126200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64060.1	TraesCS4A01G187300.1	AT5G21326.1	23162070
AT1G64060.1	TraesCS4B01G131000.1	AT5G21326.1	23162070
AT1G64060.1	TraesCS4D01G126200.1	AT5G21326.1	23162070

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G350600.1	Wheat	mitochondrion	98.34	97.62
TraesCS1B01G362200.1	Wheat	mitochondrion	98.65	97.53
Zm00001d038762_P001	Maize	plastid	86.99	88.19
KXG22389	Sorghum	mitochondrion	87.1	87.46
Os05t0528000-01	Rice	mitochondrion	86.47	87.38
HORVU1Hr1G081950.8	Barley	plastid	85.43	84.47
TraesCS3A01G280200.1	Wheat	mitochondrion	79.81	78.59
GSMUA_Achr9P05450_001	Banana	mitochondrion	68.78	75.89
GSMUA_Achr6P31850_001	Banana	mitochondrion	68.78	74.1
VIT_02s0025g00510.t01	Wine grape	cytosol	70.86	72.22
KRH59983	Soybean	cytosol, nucleus, plasma membrane	69.2	70.67
KRH41250	Soybean	cytosol	68.99	70.46
KRH77593	Soybean	cytosol	67.01	69.47
KRH27880	Soybean	cytosol	66.81	69.26
Solyc08g081690.2.1	Tomato	cytosol	68.37	68.22
PGSC0003DMT400032088	Potato	cytosol, nucleus, peroxisome	12.7	68.16
CDY08347	Canola	mitochondrion	66.81	68.01
AT1G64060.1	Thale cress	cytosol	66.81	68.01
Bra027764.1-P	Field mustard	mitochondrion	66.81	67.72
CDY38202	Canola	mitochondrion	63.89	65.11
TraesCS1A01G290700.2	Wheat	mitochondrion	45.06	54.12
TraesCS5A01G301700.1	Wheat	cytosol	51.72	54.02
TraesCS5A01G499900.1	Wheat	cytosol	51.4	53.75
TraesCS5A01G527600.1	Wheat	cytosol	47.24	53.6
TraesCS5A01G093600.1	Wheat	cytosol	47.55	52.11
TraesCS3A01G354200.2	Wheat	cytosol	45.79	51.7
TraesCS3A01G182900.1	Wheat	cytosol	47.87	51.05
TraesCS6A01G180600.1	Wheat	mitochondrion	50.78	51.05
TraesCS5A01G211800.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	52.45	50.96
TraesCS1A01G285700.1	Wheat	cytosol	45.99	47.32
TraesCS1A01G357100.1	Wheat	cytosol	29.14	43.01
TraesCS1A01G284600.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	34.13	41.41
TraesCS2A01G312600.1	Wheat	plasma membrane	14.26	18.32
TraesCS2A01G396000.1	Wheat	plasma membrane	13.84	17.14

Protein Annotations

Gene3D:1.10.238.10	MapMan:10.1.1	Gene3D:2.40.30.10	ncoils:Coil	InterPro:Cyt_b245_heavy_chain	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6
GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016491	GO:GO:0050664	GO:GO:0055114
InterPro:IPR002048	InterPro:IPR017927	InterPro:NADPH_Ox	PFAM:PF01794	PFAM:PF08022	PFAM:PF08030
PFAM:PF08414	PRINTS:PR00466	ScanProsite:PS00018	PFscan:PS50222	PFscan:PS51384	PANTHER:PTHR11972
PANTHER:PTHR11972:SF66	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF47473	SUPFAM:SSF52343	SUPFAM:SSF63380	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS1A01G347700	EnsemblPlants:TraesCS1A01G347700.1	TIGR:cd00051	TIGR:cd06186	SEG:seg	:

Description

No Description!

Coordinates

chr1A:-:533447995..533455838

Molecular Weight (calculated)

107927.0 Da

IEP (calculated)

9.503

GRAVY (calculated)

-0.223

Length

961 amino acids

Sequence
(BLAST)

001: MRGVGGGGGL GAPGRARWGG SGATTPRSLS TGSSPRGSDR SSDDGEELVE VTLDLQEDDT IVLRSVEPAA AANASANASS GASPSVMGWG AEPTPPPGAG
101: AGPSRSRSPA IRRTSSHRLL QFSQELKAGV SRAKQISQDL TKRFTRTQSR AALAEPPAHP PSGIESALAA RAERRQRAQL DRTKSTAQRA IKGLRFISGN
201: AKASNNAWIE VQRNFDRLAL DGRLSRADFP QCIGMMESKE FAMELFDTLC RRRQMQSDHI NREELREIWS QITDNSFDSR LQIFFDMVDK DADGHITEAE
301: VKEIIMLSAS ANKLARLKEQ AEEYAALIME ELDPEGLGYI ELWQLETLLL QKDTYVNYSQ ALSYTSQALS QNLAGLRHKS PIRKMSSKLS YYLEDNWKRL
401: WVLALWIGIM VGLFIWKFIQ YRNRYVFSVM GYCVTIAKGA AETLKLNMAL ILLPVCRNTI TWLRNTRAAR ALPFDDNINF HKTIAAAIVV GVILHAGNHL
501: ACDFPRLIDS SDETYGPLRK YFGETKPTYL ALVRGVEGVT GVIMVVCMLI AFTLATRWFR RSLVKLPKPF DKLTGFNAFW YSHHLFIIVY ISLVIHGERL
601: YLILDWYKRT TWMYLAVPVG LYVGERTLRF FRSGSYSVRI LKVAIYPGNV LTLQMSKPPT FRYKSGQYMF VQCPDVSPFE WHPFSITSAP GDEFLSIHVR
701: QLGDWTRELK RVFSAACEPP MNGKSGLLRA DENTKKTFPK LLIDGPYGSP AQDYSKYDVL LLVGLGIGAT PFISILKDLI NNIIKMEEED EASTDLYPPI
801: GPSKASVDLD TLMRITSKPK RVFKTTNAYF YWVTREQGSF DWFKGIMNEI AELDQRNIIE MHNYLTSVYE EGDARSALIT MLQALNHAKN GVDVVSGTRV
901: RTHFARPNFK RVLSKVASKH PYAKIGVFYC GAPVLAQELS NLCHEFNGKC TTKFEFHKEH F

Best Arabidopsis Sequence Match ( AT1G64060.1 )
(BLAST)

001: MKPFSKNDRR RWSFDSVSAG KTAVGSASTS PGTEYSINGD QEFVEVTIDL QDDDTIVLRS VEPATAINVI GDISDDNTGI MTPVSISRSP TMKRTSSNRF
101: RQFSQELKAE AVAKAKQLSQ ELKRFSWSRS FSGNLTTTST AANQSGGAGG GLVNSALEAR ALRKQRAQLD RTRSSAQRAL RGLRFISNKQ KNVDGWNDVQ
201: SNFEKFEKNG YIYRSDFAQC IGMKDSKEFA LELFDALSRR RRLKVEKINH DELYEYWSQI NDESFDSRLQ IFFDIVDKNE DGRITEEEVK EIIMLSASAN
301: KLSRLKEQAE EYAALIMEEL DPERLGYIEL WQLETLLLQK DTYLNYSQAL SYTSQALSQN LQGLRGKSRI HRMSSDFVYI MQENWKRIWV LSLWIMIMIG
401: LFLWKFFQYK QKDAFHVMGY CLLTAKGAAE TLKFNMALIL FPVCRNTITW LRSTRLSYFV PFDDNINFHK TIAGAIVVAV ILHIGDHLAC DFPRIVRATE
501: YDYNRYLFHY FQTKQPTYFD LVKGPEGITG ILMVILMIIS FTLATRWFRR NLVKLPKPFD RLTGFNAFWY SHHLFVIVYI LLILHGIFLY FAKPWYVRTT
601: WMYLAVPVLL YGGERTLRYF RSGSYSVRLL KVAIYPGNVL TLQMSKPTQF RYKSGQYMFV QCPAVSPFEW HPFSITSAPE DDYISIHIRQ LGDWTQELKR
701: VFSEVCEPPV GGKSGLLRAD ETTKKSLPKL LIDGPYGAPA QDYRKYDVLL LVGLGIGATP FISILKDLLN NIVKMEEHAD SISDFSRSSE YSTGSNGDTP
801: RRKRILKTTN AYFYWVTREQ GSFDWFKGVM NEVAELDQRG VIEMHNYLTS VYEEGDARSA LITMVQALNH AKNGVDIVSG TRVRTHFARP NWKKVLTKLS
901: SKHCNARIGV FYCGVPVLGK ELSKLCNTFN QKGSTKFEFH KEHF

Arabidopsis Description

RBOHFRespiratory burst oxidase homolog protein F [Source:UniProtKB/Swiss-Prot;Acc:O48538]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.