Factsheet for GSMUA_Achr6P31850_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr3P09340_001
GSMUA_Achr7P21500_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64060.1	GSMUA_Achr11P...	AT5G21326.1	23162070
AT1G64060.1	GSMUA_Achr3P09340_001	AT5G21326.1	23162070
AT1G64060.1	GSMUA_Achr7P21500_001	AT5G21326.1	23162070

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P05450_001	Banana	mitochondrion	87.33	89.44
Os01t0734466-01	Rice	peroxisome, plasma membrane	48.43	80.6
VIT_02s0025g00510.t01	Wine grape	cytosol	78.03	73.81
Zm00001d043543_P002	Maize	mitochondrion	76.23	72.11
EES01429	Sorghum	mitochondrion	76.23	72.03
KRH59983	Soybean	cytosol, nucleus, plasma membrane	75.9	71.94
KRH41250	Soybean	cytosol	75.67	71.73
HORVU3Hr1G069780.1	Barley	mitochondrion	75.22	71.61
PGSC0003DMT400032088	Potato	cytosol, nucleus, peroxisome	14.35	71.51
TraesCS3B01G314000.2	Wheat	mitochondrion	75.45	71.29
TraesCS3D01G279900.1	Wheat	mitochondrion	75.56	71.25
Os05t0528000-01	Rice	mitochondrion	75.9	71.19
Zm00001d038762_P001	Maize	plastid	75.56	71.1
KRH27880	Soybean	cytosol	73.43	70.66
KRH77593	Soybean	cytosol	73.09	70.33
KXG22389	Sorghum	mitochondrion	75.45	70.32
Solyc08g081690.2.1	Tomato	cytosol	74.66	69.16
TraesCS3A01G280200.1	Wheat	mitochondrion	75.45	68.95
TraesCS1A01G347700.1	Wheat	mitochondrion	74.1	68.78
CDY08347	Canola	mitochondrion	72.76	68.75
AT1G64060.1	Thale cress	cytosol	72.65	68.64
Bra027764.1-P	Field mustard	mitochondrion	72.87	68.57
TraesCS1D01G350600.1	Wheat	mitochondrion	74.33	68.49
TraesCS1B01G362200.1	Wheat	mitochondrion	74.33	68.21
CDY38202	Canola	mitochondrion	69.51	65.75
GSMUA_Achr6P11760_001	Banana	golgi	30.04	65.69
HORVU1Hr1G081950.8	Barley	plastid	71.08	65.23
GSMUA_Achr10P...	Banana	plasma membrane	37.44	64.11
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, peroxisome	20.52	62.03
GSMUA_Achr5P29250_001	Banana	cytosol	46.3	57.2
GSMUA_Achr6P16270_001	Banana	cytosol	55.04	57.03
GSMUA_AchrUn_...	Banana	cytosol	14.57	57.02
GSMUA_Achr5P26970_001	Banana	cytosol, peroxisome, plasma membrane	53.03	56.71
GSMUA_Achr3P05840_001	Banana	mitochondrion	56.28	56.4
GSMUA_Achr8P23680_001	Banana	mitochondrion	55.94	56.0
GSMUA_Achr2P21340_001	Banana	cytosol, peroxisome, plasma membrane	51.23	54.8
GSMUA_Achr10P...	Banana	cytosol	55.16	53.54
GSMUA_AchrUn_...	Banana	cytosol	26.12	53.2
GSMUA_Achr9P07100_001	Banana	mitochondrion, plasma membrane	32.96	52.88
GSMUA_Achr6P11770_001	Banana	cytosol	23.43	51.99
GSMUA_Achr10P...	Banana	cytosol	48.65	51.42
GSMUA_Achr11P...	Banana	mitochondrion	28.7	48.85
GSMUA_Achr10P...	Banana	nucleus, plastid	15.13	48.39
GSMUA_Achr8P12260_001	Banana	peroxisome	10.76	19.2
GSMUA_Achr8P12250_001	Banana	plasma membrane	15.13	19.07
GSMUA_Achr11P...	Banana	plasma membrane	15.25	18.6
GSMUA_Achr6P28010_001	Banana	plasma membrane, plastid	15.25	17.55
GSMUA_Achr8P12270_001	Banana	plasma membrane	15.36	15.05
GSMUA_Achr8P12300_001	Banana	extracellular, peroxisome, plastid	2.91	11.4

Protein Annotations

Gene3D:1.10.238.10	MapMan:10.1.1	Gene3D:2.40.30.10	ncoils:Coil	InterPro:Cyt_b245_heavy_chain	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6
GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0050664	GO:GO:0055114	GO:GO:0098869	EnsemblPlantsGene:GSMUA_Achr6G31850_001	EnsemblPlants:GSMUA_Achr6P31850_001	EnsemblPlants:GSMUA_Achr6T31850_001
InterPro:IPR002048	InterPro:IPR017927	UniProt:M0TBY0	InterPro:NADPH_Ox	PFAM:PF01794	PFAM:PF08022
PFAM:PF08030	PFAM:PF08414	PRINTS:PR00466	ScanProsite:PS00018	PFscan:PS50222	PFscan:PS51384
PANTHER:PTHR11972	PANTHER:PTHR11972:SF66	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF47473	SUPFAM:SSF52343	SUPFAM:SSF63380
TMHMM:TMhelix	UniParc:UPI000294A391	SEG:seg	:	:	:

Description

Respiratory burst oxidase homolog protein F [Source:GMGC_GENE;Acc:GSMUA_Achr6G31850_001]

Coordinates

chr6:+:31497747..31502482

Molecular Weight (calculated)

101302.0 Da

IEP (calculated)

9.609

GRAVY (calculated)

-0.238

Length

892 amino acids

Sequence
(BLAST)

001: MRGSTRHERR WASDTVPRGR SMSVGSSPGT SASNDGEEFV EVTIDLQDDD TIAEAVARAR QLKEDLKAEL KRFTWGHGPS RAGASTSAGG VAGASPALDS
101: ALASRAARRQ RAQLDRTRSG AQKALRGLRF ISGGKATAVD AWNEVQSNFD KLARDGYLSR SDFAQCIGMK DSKEFALELF DALSRRRRLN AERITKEELY
201: EFWCQITDQS FDSRLQIFFD MVDKNEDGRI TEEEIIMLSA SANKLSRLKE QAEEYAALIM EELDPERLGY IELWQLETLL LQKDTYLNYS QALSYTSQAL
301: SQNLAGLRKK GPIRKLSTKL GYYLEENWKR LWVMALWVGV MAGLFAWKFI QYRHRYAFQV MGYCLTTAKG AAETLKLNMA LVLLPVCRNT ITWLRSTRLA
401: RALPFDDNIN FHKAIAAAIM VGVILHAGNH VTCDFPRLIS SSADKYNMLR PYFGETKPTY MDLVRGPEGV TGIIMLVCMV VAFTLATHWF RRSLVRFPKP
501: FDRLTGFNAF WYSHHLFVIV YVLLIVHGEC LYLIHKWYNK TTWMYLAAPV LLYVGERSLR ALRSGYYSVR LLKVAIYPGN VLTLQMSKPS AFRYQSGQYM
601: FVQCPAVSPF EWHPFSITSA PGDSYLSVHI RQLGDWTREL KRVFAAACEP PVAGKSGLLR ADEATKKSLP KLLIDGPYGA SAQDYKKYDV LLLVGLGIGA
701: TPFISILKDL LNNIVKMEEE NDALSDYRPP KPQNGERVDL ATLMRASRRV RWALRTTNAY FYWVTREQGS FDWFKGVMNE VAELDQRGVI EMHNYLTSVY
801: EEGDARSALI TMIQALNHAK NGVDIVSGTR VRTHFARPNW KRVFSKICSK HPHAKIGVFY CGAPVLAQEL SKICYDHNQR GTTRFDFHKE HF

Best Arabidopsis Sequence Match ( AT1G64060.1 )
(BLAST)

001: MKPFSKNDRR RWSFDSVSAG KTAVGSASTS PGTEYSINGD QEFVEVTIDL QDDDTIVLRS VEPATAINVI GDISDDNTGI MTPVSISRSP TMKRTSSNRF
101: RQFSQELKAE AVAKAKQLSQ ELKRFSWSRS FSGNLTTTST AANQSGGAGG GLVNSALEAR ALRKQRAQLD RTRSSAQRAL RGLRFISNKQ KNVDGWNDVQ
201: SNFEKFEKNG YIYRSDFAQC IGMKDSKEFA LELFDALSRR RRLKVEKINH DELYEYWSQI NDESFDSRLQ IFFDIVDKNE DGRITEEEVK EIIMLSASAN
301: KLSRLKEQAE EYAALIMEEL DPERLGYIEL WQLETLLLQK DTYLNYSQAL SYTSQALSQN LQGLRGKSRI HRMSSDFVYI MQENWKRIWV LSLWIMIMIG
401: LFLWKFFQYK QKDAFHVMGY CLLTAKGAAE TLKFNMALIL FPVCRNTITW LRSTRLSYFV PFDDNINFHK TIAGAIVVAV ILHIGDHLAC DFPRIVRATE
501: YDYNRYLFHY FQTKQPTYFD LVKGPEGITG ILMVILMIIS FTLATRWFRR NLVKLPKPFD RLTGFNAFWY SHHLFVIVYI LLILHGIFLY FAKPWYVRTT
601: WMYLAVPVLL YGGERTLRYF RSGSYSVRLL KVAIYPGNVL TLQMSKPTQF RYKSGQYMFV QCPAVSPFEW HPFSITSAPE DDYISIHIRQ LGDWTQELKR
701: VFSEVCEPPV GGKSGLLRAD ETTKKSLPKL LIDGPYGAPA QDYRKYDVLL LVGLGIGATP FISILKDLLN NIVKMEEHAD SISDFSRSSE YSTGSNGDTP
801: RRKRILKTTN AYFYWVTREQ GSFDWFKGVM NEVAELDQRG VIEMHNYLTS VYEEGDARSA LITMVQALNH AKNGVDIVSG TRVRTHFARP NWKKVLTKLS
901: SKHCNARIGV FYCGVPVLGK ELSKLCNTFN QKGSTKFEFH KEHF

Arabidopsis Description

RBOHFRespiratory burst oxidase homolog protein F [Source:UniProtKB/Swiss-Prot;Acc:O48538]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.